G8091 (abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823)


Basic Information

Item Value
gene id G8091
gene name abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31532069 ~ 31537416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU12079
cgacttaattaaataaattaagtatacagtatttttatcaCATTATTTCTGCAGTGGATATCTGGCAACCACAGttgctgtttttacagtaaacgTACACAATGCGATGAGCTCACAATGTCTTTTTTACATTTCGTTCATGCAGAAAGATGTCAAGTCTGACCCGAAGATTATCCAAGACGTGTCTATAGCAACAGACAGTCTGCTGGAGAGTTTGGGAGCATTAACGGTGGAGctCGCGAGCATGAAGAGCTGGCGGGACATGCGCAACGAGATCCTGTACCTGACGGGCAACAGCACGCAGTCCCCCAACCACATGTACCAGGCCGTGTCCCGCATCGTCTGCGGTCACCCGGAGGGCGGAGGCCTGAAGATCAAGTCCCTCAACTGGTACGAGGACAACAACTACAAGGCCCTGTTCGGGAACTACGGCAATGACAGCGACGGCGAGCCCGCCTCCGTTTACGACAACTCCTCCAcGCCCTACTGCAACAGCCTGATGAAGGGCCTGGAGTCCAGTCCCATATCCCGCATGATCTGGAGGGCTCTGAAGCCGCTGCTCATGGGCAAGATCTTGTACACCCCTGACACCCCCGCCACGCAGAGGATCATACAAGAGGTCAATAAGACGTTTCAGGAGCTCGGTGTTCTCAGAGACCTCGGAGGCATGTGGGAAGAGATGAGACCCAAAATCTGGAACTTCATGGAGAACAGTGAGGAGATGGACCTCGTTCGGgtgcgtcacacacacacacacacacacgcacacaca

Function

symbol description
abca1a Predicted to enable ATPase-coupled transmembrane transporter activity; phosphatidylcholine floppase activity; and phosphatidylserine floppase activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including blood vessel; central nervous system; neural tube; pleuroperitoneal region; and segmental plate. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hypolipoproteinemia (multiple); obesity; and type 2 diabetes mellitus. Orthologous to human ABCA1 (ATP binding cassette subfamily A member 1).

NR:

description
PREDICTED: ATP-binding cassette sub-family A member 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12079 True 772 TUCP 0.55 4 31532069 31537416

Neighbor

gene id symbol gene type direction distance location
LOC122349710 patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520 coding downstream 138983 31384340 ~ 31393086 (-)
LOC122349700 NA coding downstream 153530 31372496 ~ 31378539 (-)
cldng LOC107748278,LOC107691622,LOC107580989,LOC107552232,LOC107654796 coding downstream 557908 30972789 ~ 30974161 (-)
creb1a creb1a,creb1b,LOC107714305,LOC107757658,LOC107691602,LOC107552236 coding downstream 590343 30936398 ~ 30941726 (-)
cd99 LOC107746638,LOC107654756,LOC107714307,LOC107598750 coding downstream 658704 30862379 ~ 30873365 (-)
tacr3l tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976 coding upstream 24565 31561981 ~ 31572621 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding upstream 53721 31591137 ~ 31595295 (-)
glb1 glb1,LOC107746116 coding upstream 58415 31595831 ~ 31602441 (-)
LOC122327810 LOC107747443 coding upstream 96985 31634401 ~ 31661603 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding upstream 190672 31728088 ~ 31734933 (-)
G8074 NA non-coding downstream 36159 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 51725 31479187 ~ 31480344 (-)
G8063 NA non-coding downstream 53209 31354663 ~ 31478860 (-)
G8086 NA non-coding downstream 61552 31468295 ~ 31470517 (-)
G8066 NA non-coding downstream 65036 31465621 ~ 31467033 (-)
G8093 NA non-coding upstream 10779 31548195 ~ 31548754 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding upstream 42514 31579930 ~ 31580156 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding upstream 43322 31580738 ~ 31589790 (-)
G8009 NA other downstream 574583 30943498 ~ 30957486 (-)
G7868 NA other downstream 901564 30630234 ~ 30630505 (-)
G7816 NA other downstream 1334221 30192201 ~ 30197848 (-)
G7648 LOC107662685,LOC107678949 other downstream 2055731 29426098 ~ 29476338 (-)
G7655 LOC107662685 other downstream 2056681 29452759 ~ 29475388 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other upstream 12770 31550186 ~ 31554035 (-)
LOC122349741 NA other upstream 85258 31622674 ~ 31626684 (-)
LOC122349752 NA other upstream 89487 31626903 ~ 31630020 (-)

Expression


Co-expression Network