G1287 (socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765)


Basic Information

Item Value
gene id G1287
gene name socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6219924 ~ 6221396 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU1866
GTCACATCAAATAATTtacctttaataataaaaagcaatccTGAACAAATAAAACCCTTGTCTCACTAGGTGAAATGCATATTTCTGCATAGCAGAATGTGTTGCTATACAATATATAAGATACATTATATAGCctacatattgtatatatgtaccaatatatataaaaaaaaaattattcaaatgttcatACTGATAACGACATCACCAGCGACTTGTGGTCAGTGGTTTACATTCAGACAATACTATGGTATTATACTAAGGTATAAccaaattattaaatcaatcattttacaCGAATTCAAATTCTGCACTGACCAAGTACCAGCGGGACTGCTATAAAGCAACTGAAGGCCTGTGGTGCTGTTTCCGATCTTACTGcacgttaaaaaaatacaaatgttttgtagtGCACTGTTAATATCGCAAAATAGTCCTAACAATCACTACACgcataaatacagtacatgttATCGTTGGGTCAGTGAAAAGTACAGAATCCTACGCATTACCTCGGCAAAATCCGGCCTGCTTTAACTAAATCAGCACAGCTGGCCAATTCGCAAATTCGCCACTTCGCCTAAAAGAAATTTAGTTGGTTTAAAGTCATTTCTGTGCGAGCAGACAATCCGCTATTTTTCTCGCCCCGTGAAATTTTGCAGAATTTCCTCTAATGTGACCCCGCCAAATGAAATGCACTTTGGGATAGCTGTTCCAATAAATCGTACTTTGTCGAAGAGCTGCAACGTCTGTAACATCTACACGCGAACGACGCACGTTCATATACTAAAAGGGTACAACCACAGAAATTCTTTCAGTTTCTTGCTCACGGGGAGATGTTGAATACTATCTTTCCCCAAACTCCGCACCACGGCTCTCCTCGACAGTTCTTGCAGGCTCTGCGGCGCTTCTCCGCGATACGGCATGCTCAGGCTCTTTTTGGGGGACGCAATATAGTATTCTAGCAAGCCAAAAAGGCAAGAGAATGTATTTTTGCTTCCCGCTAAACTGAATCCTCCGTCCTTCAGGAGCACCCTCACGCTGGTCGGGCCCTCGGGGGCCCGATAGCTGAGAGTGAAGAAAACGTTTGCCTGCATGCTGTCCCGGATCAGAAATGTCCCAAGAGGAAGTCTGGCAAGTCGAAAGTGAGCTTCGTCTACTTCCAAGGGGCCCCAGTAAAATCCACTGTGCTTCAAGTAATCCACCGCCTGGGTGATGAGGTCACATTCCCGCTGGTCCCGAAAGGGGTGGAAGTGTGTTGGTAGGACAGCACAGGGTTTAGGGGACTCGGCCAGCTTGGATGGGCTCTGTGGCGCGACTGCATGGTCAGTGTCATTATGCTGGACCATTCTGAATCAGGGCACACTCATACCATTCCTCCATGGTCCTACGACATAGATGAACGATTCTGCGGC

Function

symbol description
socs1b Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; regulation of growth; and regulation of signal transduction. Predicted to be located in cytoplasm. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in head kidney. Human ortholog(s) of this gene implicated in ovarian carcinoma; prostate cancer; and urinary bladder cancer. Orthologous to human SOCS1 (suppressor of cytokine signaling 1).

NR:

description
PREDICTED: suppressor of cytokine signaling 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1866 True 1415 lncRNA 0.45 2 6219924 6221396

Neighbor

gene id symbol gene type direction distance location
zgc:77849 zgc:77849,LOC107722949,LOC103038624,LOC107692663,LOC107564565,LOC108439082,LOC107702534,LOC107590708 coding upstream 106399 6107861 ~ 6113525 (+)
fscn1b fscn1,fscn1b,LOC107692665,LOC107564588,LOC107722932,LOC107590764,LOC107702511 coding upstream 120094 6094349 ~ 6099830 (+)
slc29a4b si:ch211-160d14.6,slc29a4,LOC107692733,LOC107590706,LOC107565581,LOC107575408,LOC107722931,LOC107702536,LOC108439098 coding upstream 149288 6062142 ~ 6070636 (+)
smcr8b LOC107725400,LOC107564620,LOC107692669,LOC107702539,LOC107722967 coding upstream 180080 6035257 ~ 6039844 (+)
mief2 mief2,LOC107725398,LOC107564637,LOC107692671,LOC107722970,LOC107590704,LOC107702540 coding upstream 186126 6028082 ~ 6033798 (+)
tlr2 tlr2,LOC107590711,LOC107722930 coding downstream 5002 6226398 ~ 6231182 (+)
prkcba prkcb,LOC107722959,LOC107702530 coding downstream 11640 6233036 ~ 6260748 (+)
cacng3a cacng3,LOC107590766 coding downstream 41026 6262422 ~ 6267501 (+)
rasd3 zgc:152698,LOC107565554,LOC107692726 coding downstream 67334 6288730 ~ 6292181 (+)
plk1 plk1,LOC107722962,LOC107590713,LOC107702528 coding downstream 73353 6294749 ~ 6299522 (+)
G1206 NA non-coding upstream 104643 6114964 ~ 6115281 (+)
G1201 NA non-coding upstream 128767 6090845 ~ 6091157 (+)
G1200 NA non-coding upstream 129471 6090173 ~ 6090453 (+)
G1199 NA non-coding upstream 130069 6089509 ~ 6089855 (+)
G1195 LOC107751037 non-coding upstream 142638 6075698 ~ 6077286 (+)
G1292 NA non-coding downstream 5896 6227292 ~ 6277288 (+)
G1301 NA non-coding downstream 57821 6279217 ~ 6280631 (+)
G1332 LOC107692651,LOC107725361,LOC107590714,LOC107722945,LOC107702522 non-coding downstream 110680 6332076 ~ 6345567 (+)
G1348 NA non-coding downstream 178996 6400392 ~ 6400757 (+)
G1357 NA non-coding downstream 215558 6436954 ~ 6437177 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other upstream 132269 6057404 ~ 6087655 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other upstream 338790 5879460 ~ 5881134 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 1194010 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 1242661 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 1275083 4938181 ~ 4944841 (+)
G1318 NA other downstream 64462 6285858 ~ 6287198 (+)
G1414 NA other downstream 312106 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 490239 6711635 ~ 6845548 (+)
rgs11 rgs11,LOC107692642,LOC107590769,LOC107722934,LOC107714145 other downstream 550090 6771486 ~ 6782141 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other downstream 625104 6846500 ~ 6860270 (+)

Expression


Co-expression Network