G139 (rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592)


Basic Information

Item Value
gene id G139
gene name rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1148386 ~ 1151169 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU196
ttttttgcatttatttaattttaaccattGAATGATTTTAACCATCTAGACCTCTTGAGGTGTAAAAGgacaaattgtcatttttaagggTTCTTACAGACATTTGAGATGTTAAAAACTGCCTACATTAAATGTTAGGTTAACCGAACCGcttctttaaatctttattgCTTCAAATAAAAGTAACAGGACATCTGGACTCTTCTTGTGGAAAGTGCCGAAAGCGTTTCATGACAAATACTGTTCCCACCCGATTATTCTAAAGCAAATCCCATGATTGTTTTactacattattacaaaatacataattcaGTATCTGCAACATTCTATATCGAGGTGCTAAGTAGAAACCACAACATAATCAGCTGAATATTCCCAGCAGTTTCATAAATCAAAACAGACACGACTTTACAAAAGAAAAGTGCTTCTCAGCATCCTATTTGGCTTCCTCAAAGAAAATGTCCCTCAAAGTAAAGCCCCTCATCGCTGCAACGGCGCACACATCGTCTGAGAGTCCCTCGGAGGAAACGTCACCACGTCTGACGGCGGGCCGCTTGGAAGAACAGAACTAGCTCATTCTGGctctttattaaagtaatggCAGTTTAAGACATCAGGTTCTATATGTGCAAACTAAACGAAATCAACGCGATCGAGTCTCTTGCGAACAGCGTCAGACTTAGAATGAAAACATGCGGGGAAAAGAAAGACTCAAGTTTGGTGCATTTTTTAACCcctttgaccttttttttttttttttttttttttttttttacagtttcttgttaatttattcaTCATAAACGTGTCGGATTAAGGCATTTACACACTAGAGAAAGCTTCGCACTTCGCGATCCGTTTTTGGAGGGAAACACAAGCGGGATTTTCGATTTAACGTCACTTTCGCCAACCCAAAACGTTCTTTCCAGCGACATTAATAGAACATTTATTGTTAGCGCTTAATCATTATTTACACATGGCTCACGGaacattttgatacatttttaaatgttaccacTTACGTTTTCGGAATGTTCAGAGGACgttcaaaagtaacattctGTAACATTTGCATTACCAACTTAGCAAAAAAGAATGTTTTGCTAACGTTCCCATTACGTTATGAAAAAGTTATTTATCAATGGCCTCGTTCAAAACGTTCTTTTAGTTTTATGCGAATTTTACTATTGAATGTTCacaaaatcaattatttatgcACGGCTCAgggaacattttaatacatttctataaCGTTACCACTTACGTTTTCAGAACGTTCAGAGAACATTCAGAAGTAAAATGATAACATTCCATTAATATTTACTGTGATGTTTGCACGAtcaagaagaacaaaaaaacgaTGTGAAAAGACGTTTTGCTAATATTCCTATTATGTTATAAAAGCgttatttttcagtttgtctCTGAAcacccaaaacattttttttttttatgttttaaatgttctttttgtttccattttgcAGACACTTTTGAAGGTCCTCTAACGTTCCAAATCAAATAGTAACGTTTAAACAATGTTAGAAAAACGACCAATTAAAACGTTTAAGAAATGTATGTGTAAAGgtgagcctggagcacaaaagcagtcataagtagcacaggtttatttatagcaatagccaacaataaattatatgtgtcaaaagtaaaaaaaaaattattttatgccaaaaaatctTTTGGATATTGAGGAAAGATCATGtcccatgaagatattttctaCTGTAAACACATCAAAGCTTCATttatgattagtaatatgcatcgctaagaatTTAAACGTTTGCCGATTTTATGTATTTCGATTTTTCCCACacttagattccagattttcaaGGAAAGCTTTTTTATTCGTCTGATACGTAAAtaaatttccaaaaaaacaacctttatgactgcttttgtggttgTGGGTCACTAATAACACTGAGAACATCAGACCATTACAGCAGAGCGCGTTGAACGAACATTCAATTAACGTTACCGGAAGAACGTTTGCTCATAAATGTACGCGATGCATCAAAAGAACGGATCTGCAGCATTCTCTAGTGTGTAGACGCCGTTCACGCGTGTTTGAAGACCACTCTTTAGCGACGATCTCCACGTGGAACCCCTCCGAGAACCTCGTGTGATTGTGAGGGGTTATTGTATATTGCAGGAGGAGCAGCACGGGTCTTCCTTATCCGGCTGAGAGGCGTAGTCCATCTGCCTGACTATCTCCGAGAACAGTTCGTCCACCATGGTTTTGCTCTTGGCCGACGTCTCCATGAACGGGCAGCCCCATTCTTCAGCTAGAGCCTGGCCCTCGCTCGATGAAACCTCGCGCTCGTTGTCCAGGTCCACCTTGTTTCCCACCAGAATCACGGGCACGCGCTCGTATCTGTGGAGACACAAGAGACCCGAGAGTGAGCGAAAGACGTTTCCGAACAGGTTTTCC

Function

symbol description
rap2ab Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Rap protein signal transduction and negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be located in recycling endosome membrane. Predicted to be active in plasma membrane. Orthologous to human RAP2A (RAP2A, member of RAS oncogene family).
rap2a Enables GTPase activity; guanyl ribonucleotide binding activity; and magnesium ion binding activity. Involved in several processes, including actin cytoskeleton reorganization; microvillus assembly; and positive regulation of protein autophosphorylation. Acts upstream of or within establishment of protein localization. Located in plasma membrane and recycling endosome membrane.

NR:

description
PREDICTED: 40S ribosomal protein S9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU196 True 2461 lncRNA 0.53 3 1148386 1151169

Neighbor

gene id symbol gene type direction distance location
LOC122341978 NA coding upstream 100575 1043183 ~ 1047811 (+)
ggact.3 NA coding upstream 102597 1043185 ~ 1045789 (+)
LOC122342042 LOC107746594,LOC107582328,LOC107686751 coding upstream 409464 729071 ~ 738922 (+)
LOC122337612 cd38,LOC107568972,LOC107693813 coding upstream 556045 567855 ~ 592341 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding downstream 93994 1245163 ~ 1250334 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding downstream 95524 1246693 ~ 1261968 (+)
LOC122351641 NA coding downstream 177216 1328385 ~ 1331549 (+)
LOC122350806 NA coding downstream 183755 1334924 ~ 1346793 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 304917 1456086 ~ 1465285 (+)
G162 kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240 non-coding upstream 20296 1126466 ~ 1128090 (+)
G141 NA non-coding upstream 65007 1050762 ~ 1083379 (+)
G128 NA non-coding upstream 237689 910489 ~ 910697 (+)
G121 urp2,LOC107698908,LOC107555268,LOC107568775,LOC107718017,LOC107709382,LOC107653671 non-coding upstream 258330 888664 ~ 890056 (+)
G120 NA non-coding upstream 260023 885518 ~ 888363 (+)
G175 NA non-coding downstream 66896 1218065 ~ 1218734 (+)
G207 NA non-coding downstream 178426 1329595 ~ 1336345 (+)
LOC122350990 NA non-coding downstream 206665 1357834 ~ 1402615 (+)
G217 NA non-coding downstream 232584 1383753 ~ 1384030 (+)
G203 atp1a1a.1,LOC107718011,LOC107698904,LOC107555257,LOC107653678,LOC107717912,LOC105923069 non-coding downstream 245730 1396899 ~ 1398974 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 27665 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 698746 445940 ~ 449640 (+)
G10 NA other upstream 970186 177716 ~ 178200 (+)
LOC122327253 NA other downstream 287871 1439040 ~ 1441666 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 1034652 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1332471 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1342403 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 1360403 2511572 ~ 2518385 (+)

Expression


Co-expression Network