G162 (kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240)


Basic Information

Item Value
gene id G162
gene name kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1126466 ~ 1128090 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU226
TCCTGGAGCTTGGCCACCATGATGACGTGCAGGTGCTGGACGAGGCTGTCTAGATAGGGGACGAGCAGGGTTTTGGGACAGTCCTCGGTGAAGTTGATGAGCGCGGCGGCAGCGTGGGCCTGGACGCGAGGGTTCGACTGATCCTCCATGGTCTGCAGGAGCGCCGAGATCACCTCGTGGAACTTCTTCTGGAAGGTGGGGGCGAAGTCTGTGGCCATCTGTCCGATAGCGTTACAGGCAGCGTAACGAACTCTGGGGTGCTGATCCTGACAGAAGAGCAAAACGAAGCTGACGATCTCGCTCAGAATGGCCTCCATCTGCTGGTGGCAGCCCTCGCCGATCGCAGAGAGCGCCATCAGACCGGCGTGCCTGTACTTCCAGTCGGCTGAGGGGACAGAGCGCATTACCAACAACATCCCGTCTCTACACGCGCGCTCACAATGACCGAGCGCTCTACTCACGGTTCTGCAGCATCTGCATGATGTGCTGCTTGATCATGGGAAGGACGATCTTTCCTCCGAGGCCACACGCGATCCTGTCCAGAGCACTTTCACCCGCGACGGCATTACTGAACACCAGAAGAGA

Function

symbol description
kpnb3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and ventral mesoderm. Orthologous to several human genes including IPO5 (importin 5).
ipo5 Enables RNA binding activity. Involved in ribosomal protein import into nucleus. Located in membrane.

NR:

description
importin-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226 True 585 lncRNA 0.46 3 1126466 1128090

Neighbor

gene id symbol gene type direction distance location
LOC122341978 NA coding upstream 78655 1043183 ~ 1047811 (+)
ggact.3 NA coding upstream 80677 1043185 ~ 1045789 (+)
LOC122342042 LOC107746594,LOC107582328,LOC107686751 coding upstream 387544 729071 ~ 738922 (+)
LOC122337612 cd38,LOC107568972,LOC107693813 coding upstream 534125 567855 ~ 592341 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding downstream 117073 1245163 ~ 1250334 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding downstream 118603 1246693 ~ 1261968 (+)
LOC122351641 NA coding downstream 200295 1328385 ~ 1331549 (+)
LOC122350806 NA coding downstream 206834 1334924 ~ 1346793 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 327996 1456086 ~ 1465285 (+)
G141 NA non-coding upstream 43087 1050762 ~ 1083379 (+)
G128 NA non-coding upstream 215769 910489 ~ 910697 (+)
G121 urp2,LOC107698908,LOC107555268,LOC107568775,LOC107718017,LOC107709382,LOC107653671 non-coding upstream 236410 888664 ~ 890056 (+)
G120 NA non-coding upstream 238103 885518 ~ 888363 (+)
G84 NA non-coding upstream 503728 616164 ~ 622738 (+)
G139 rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592 non-coding downstream 20296 1148386 ~ 1151169 (+)
G175 NA non-coding downstream 89975 1218065 ~ 1218734 (+)
G207 NA non-coding downstream 201505 1329595 ~ 1336345 (+)
LOC122350990 NA non-coding downstream 229744 1357834 ~ 1402615 (+)
G217 NA non-coding downstream 255663 1383753 ~ 1384030 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 5745 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 676826 445940 ~ 449640 (+)
G10 NA other upstream 948266 177716 ~ 178200 (+)
LOC122327253 NA other downstream 310950 1439040 ~ 1441666 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 1057731 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1355550 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1365482 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 1383482 2511572 ~ 2518385 (+)

Expression


Co-expression Network