G1750 (LOC107692600)


Basic Information

Item Value
gene id G1750
gene name LOC107692600
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 7808303 ~ 7809221 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2547
TTTAGAATAAATAAAGGCTGAATAACTGATTACAGATTTTTGGGTAGTTAAACCGTAACTTTTATGAgttatgagaatactttttgtacgagaaacaactttataataaaaacaacttaattCAACAATTCAGCACTGTAGTGTATCCTCTGGGTGAAAACTGCATGCTGTTCAGTTTTAGCTGCGACACACGGATATGCTGTTTTCCAAAATGGCGCCGCAATGTTGAATTAAGTTatatgagaataaaaaaatattctcatagCATCATAAATCCTAAAtcgtgttccaaagatgaaacctttttttgggtttggaacgacatgggggtaagtgagtaataaatgaagattttcattttggggtggagtaatcCTTTAATAGATCTGAATGTGAGTAAATCATTGAATTTGTATggggaactattcctttaaaggcaAACCGCAGCTTAGTGTGACTGTATATGAGAATGCATTTCTTTGTAACCTGTTGTTTGGCACGTCTCTGAGCGAGTGCACACTCTTTGCGCAGCGCTTCCATGTCTCTGTGCAGTTGCTGGTTCTCTTGCTGCAGCGTGAGTCTCTCTTCGCTGATGGCCGAACTCTCCTGTCTTGCACTTGTCAAGGTGGACTGCAGCCTGCGCACCTCCTCCTGACAGCGTGACAGCTCCTCCGAATACCTACACAAGCACAGGGGAGGCAGCGAACTGTTATGGGGGCACCCTTATATCGGCTCTCTGTCTAGTTtatgagcatgtgtgtgtgttctcactCCATCTCCATCTTCTTCATCTTGTTTTTAGTGCTGTTGAGTGTGAGTTGCATTTCGTCTTTCAGTCGTTCAGCATTTAAGCATCTCTGATGAAGAGCCTCCATCTTCCTCATCTCAGGCTCTCCAATTCGGCCCTCTTTATAGACCT

Function

NR:

description
PREDICTED: sodium channel and clathrin linker 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2547 True 919 lncRNA 0.64 1 7808303 7809221

Neighbor

gene id symbol gene type direction distance location
clta clta,LOC107723183,LOC107564055,LOC107692603,LOC107557948,LOC107758902 coding upstream 3341 7797156 ~ 7804962 (+)
nansa nansa,LOC107723182,LOC107758866,LOC107692601,LOC107665955,LOC107557947 coding upstream 11743 7792648 ~ 7796560 (+)
gne LOC107665959,LOC107723184,LOC107692604,LOC107758846 coding upstream 16261 7774811 ~ 7792042 (+)
tmod1 tmod1,LOC107665961,LOC107692607,LOC102782831 coding upstream 46354 7749596 ~ 7761949 (+)
tdrd7a LOC107723197,LOC107692608,LOC107564078,LOC107557954,LOC107665979,LOC107758895 coding upstream 58854 7738766 ~ 7749449 (+)
c1h4orf33 LOC107557949,LOC107564032,LOC107758903,LOC107692602,LOC107723188,LOC107665957 coding downstream 9202 7818423 ~ 7821348 (+)
noctb LOC107742507,LOC107692596,LOC107702303,LOC107714224 coding downstream 654610 8463831 ~ 8471506 (+)
LOC122344791 zgc:101819,LOC107565358,LOC107692706,LOC107714206,LOC107562979,LOC107702306 coding downstream 691453 8500674 ~ 8505353 (+)
ank2a LOC107564962,LOC107692594 coding downstream 696378 8505599 ~ 8566094 (+)
crmp1 crmp1,LOC107742497,LOC107714216,LOC107702260,LOC107564953,LOC107562962,LOC105903535 coding downstream 834238 8643459 ~ 8654328 (+)
G1752 NA non-coding upstream 289 7807351 ~ 7808014 (+)
G1751 NA non-coding upstream 2051 7805705 ~ 7806252 (+)
G1732 NA non-coding upstream 100172 7706885 ~ 7708131 (+)
G1698 NA non-coding upstream 159679 7647889 ~ 7648624 (+)
G1697 NA non-coding upstream 179992 7624948 ~ 7628311 (+)
G1753 NA non-coding downstream 1762 7810983 ~ 7811354 (+)
G1754 NA non-coding downstream 2932 7812153 ~ 7813651 (+)
G1885 LOC107702304,LOC107562959,LOC107742505 non-coding downstream 586104 8395325 ~ 8474521 (+)
trnaa-agc NA non-coding downstream 653158 8462379 ~ 8462451 (+)
trnaa-agc_1 NA non-coding downstream 654051 8463272 ~ 8463344 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other upstream 86878 7720265 ~ 7721425 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 656083 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 948033 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 962755 6711635 ~ 6845548 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other downstream 145490 7954711 ~ 7985615 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 797604 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 813937 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 891219 8700440 ~ 8705873 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other downstream 952918 8762139 ~ 8780164 (+)

Expression


Co-expression Network