G1885 (LOC107702304,LOC107562959,LOC107742505)


Basic Information

Item Value
gene id G1885
gene name LOC107702304,LOC107562959,LOC107742505
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8395325 ~ 8474521 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2721
tttttttttttttttttttATTCaggaatattttttgtatttgagtAAAATCTACTTGAGTACACTTTGAAACAAGAGTACAACAAAATAGAGCATACTTCAAATGTTGAATATACAAACTAGATTATTCTGAACACGAACATCTCGTTCTCCCTCTTTAAAGGACtaataaaaccaaaagaaaaatgcGCAACAAATGTATCTGAAGTCAAGATGCATGCTAATGATTGACCTTTTTGGGGCCTGGGGATTGGCATCTTTCCAGGATTTGGATCCAGATTTACTTACACCTAATCAGAACGGTCTTTTTAATCTGGCTGATTATGATGAGaatgcaaaaatgatttgcaGTTTGTTTGCCAATAATACTGTACTGGTAAAATGCgtgagggaagaaaaaaaaaaacaaaacaaacaaacatgagaaTAACACAAAAGCTTAATAAGCTTGACTTAAAAGAATAACGACAAACAAAACTGTTCTAAGGCTGCATTGTTTATAAATTCAgtaaactgtataattaatatatacaaagTCCATTTCTTCCTTTAGTAGCGGAGGAAGAATCGACACGTTCCTGTGAAACACGGGCAGAAGCGTGCGCTCACAGTGATCGTCAAAAGAAACTGCTGGTTTTGCCTTGCAATTTAAatgttcaagaaaaaaaaaactctttatacAAGTTATAAAAAGTTGAATGTATCCTCCCTCAAAGTTTCACATACTCGACTACTTCAACTACTCACTCCTTAGTGTTCTGCTTAGCTGTTATTAGTGTCAAagttagattaaaaaaaataataactgtagTGTCCTTTACATTGGTCCCTTTTAACAACAAATGAAATGACGGACATCCAGATTTAATCCACATGATGTAAGAATTGTGGTCTTtgcctgttttgttttgtctttttctgttttttaacatataaaatgaaACCACAATCCGAATCCGAAACTGTACAAGTTAACAAATCTCCAGTTTGTACTCCCAGAATGTGATATTGAATAATATCTGGGGAatataagtttatttattatagttcaTGACTGACTAAAGGCATCACTCTTCAGCTCTCTGCTTCACACTGTGGATTTGAAGCTTCCTCTAGCACCACCGCTGCTGCTTCCTGTGTGGGATTGTCCTGCTCTGGCTGTTCTGCTGAAGTGCTGTCGGGTTTTGACTCTGCGCTTTTTGCTTTTGGACAAAGCTGGCTCTGTTGAATATGGATCTGAACTGGAGTGGACGCCGTCTGAACAGAGATCGGGACTTGAGTTTGCGTCTGGATTGAAACGGGGAACTGCGTCTTCGCCTGAGCTGGACTCTGCTGGGCTGGGACTGCCAACCGGACCACCTGCGCCCCGGGCGCCACAGACACGGGGGCAAGGGCTCGGACGGCGAGGGGGGCGCCCATCAGGTTGATGCCCGTTGGGGTGCCCGGTTTGGCCTGTAGCTGACACTGCGTGAGCTGGGTTGCGGGGATGGTAATTATCTTGGCGAGCTGGACCGTGATCTTGTCACCGTTCTCGGCCGTGGCGGGAACCATCGTTGGCATGGTCTGGATTAGAACTTTGGGTGCGTTCGCACCAGCCGCTGAGCCGGTGTTGGTGGGCGCTGTAGTGAAGAGTGAAGAGTTCGCTGACTGCATGGCCACTGTTGAGATCTTCTGCCCCAAGGAGTTGGTCATTACGACCGGCACTTGCATAGCAACCC

Function

NR:

description
PREDICTED: ETS-related transcription factor Elf-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2721 True 1718 lncRNA 0.51 2 8395325 8474521

Neighbor

gene id symbol gene type direction distance location
c1h4orf33 LOC107557949,LOC107564032,LOC107758903,LOC107692602,LOC107723188,LOC107665957 coding upstream 573977 7818423 ~ 7821348 (+)
clta clta,LOC107723183,LOC107564055,LOC107692603,LOC107557948,LOC107758902 coding upstream 590363 7797156 ~ 7804962 (+)
nansa nansa,LOC107723182,LOC107758866,LOC107692601,LOC107665955,LOC107557947 coding upstream 598765 7792648 ~ 7796560 (+)
gne LOC107665959,LOC107723184,LOC107692604,LOC107758846 coding upstream 603283 7774811 ~ 7792042 (+)
tmod1 tmod1,LOC107665961,LOC107692607,LOC102782831 coding upstream 633376 7749596 ~ 7761949 (+)
LOC122344791 zgc:101819,LOC107565358,LOC107692706,LOC107714206,LOC107562979,LOC107702306 coding downstream 26153 8500674 ~ 8505353 (+)
ank2a LOC107564962,LOC107692594 coding downstream 31078 8505599 ~ 8566094 (+)
crmp1 crmp1,LOC107742497,LOC107714216,LOC107702260,LOC107564953,LOC107562962,LOC105903535 coding downstream 168938 8643459 ~ 8654328 (+)
LOC122350473 LOC107692703,LOC107742499,LOC107562963,LOC107702261,LOC107714199,LOC107563851 coding downstream 181015 8655536 ~ 8660047 (+)
fip1l1b fip1l1b,LOC107692590,LOC107742498,LOC107702315,LOC107714215 coding downstream 186214 8660735 ~ 8668619 (+)
G1754 NA non-coding upstream 581674 7812153 ~ 7813651 (+)
G1753 NA non-coding upstream 583971 7810983 ~ 7811354 (+)
G1750 LOC107692600 non-coding upstream 586104 7808303 ~ 7809221 (+)
G1752 NA non-coding upstream 587311 7807351 ~ 7808014 (+)
G1751 NA non-coding upstream 589073 7805705 ~ 7806252 (+)
G1902 camk2d2,LOC107563926,LOC107742503,LOC107714220,LOC107562980 non-coding downstream 51060 8525581 ~ 8578361 (+)
G1968 NA non-coding downstream 221436 8695957 ~ 8697410 (+)
G1971 NA non-coding downstream 237653 8712174 ~ 8714035 (+)
G1977 LOC107758879 non-coding downstream 255536 8730057 ~ 8730394 (+)
G1979 NA non-coding downstream 266311 8740832 ~ 8742521 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other upstream 409710 7954711 ~ 7985615 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other upstream 673900 7720265 ~ 7721425 (+)
mpc2a LOC107564279,LOC107692629,LOC107665976,LOC108258922 other upstream 1243105 7146873 ~ 7152220 (+)
LOC122351737 lratb,LOC107758869,LOC107590749,LOC107665934,LOC107714130,LOC108439370,LOC108258974 other upstream 1535055 6846500 ~ 6860270 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other upstream 1549777 6711635 ~ 6845548 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other downstream 132304 8606825 ~ 8607785 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other downstream 148637 8623158 ~ 8634399 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other downstream 225919 8700440 ~ 8705873 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other downstream 287618 8762139 ~ 8780164 (+)
G2063 NA other downstream 560565 9035086 ~ 9035600 (+)

Expression


Co-expression Network