LOC122342651 (LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840)


Basic Information

Item Value
gene id LOC122342651
gene name LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 8762139 ~ 8780164 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU2886
agGATGGCTTCACACCTCTAGCTATTGCACTGCAACAAGGCCATAATCAGGTGGTGTCCATCCTTTTAGAGAATGACACGAAGGGCAAAGTACGTCTGCCTGCCTTACACATTGCAGCCCGCAAAGACGACACGAAGTCTGCTGCCCTGCTGCTCCAAAATGACCACAATGCCGATGTACAGTCTAAGAGTGGATTCACACCCCTGCATATCGCTGCTCACTACGGAAATGTAAATGTCGCAACACTGCTCCTCAATCGAGGGGCCGCTGTGGACTTCACTGCAAGGAATGGGATCACGCCACTACATGTTGCGTCTAAGAGGGGAAACACTAATATGGTTCATCTGCTGTTGGACAGAGGGGCTCAGATTGATGCCAAAACAAGGGATGGCCTCACGCCCTTACACTGCGCAGCAAGAAGTGGGCATGACACCGCAGTGGAGCTCTTATTGGAGAGAGGAGCCCCTATGCTTGCCAGAACCAAGAACGGTTTATCTCCGCTCCACATGGCAGCGCAGGGTGACCATGTGGAGTGCGTCAAACACCTGCTGNNNN
>XM_043236629.1
ATGTGTAAGGCATGTGGTTCAGGTAAAGGCCTGCGGACCATTGGAAGTGATCCATCTCTGGACCATTACTACAGTTCTGTGGCAGATAACATGtCGGACAGTAATACCAGCTTCCTGAGGGCAGCCAGGGCAGGTAACATTGATAAGGTGCTGGAGTTTCTCAAGAGCGGACAGGACATTTCCACATGCAATCAGAATGGCCTCAACGCTTTGCACTTGGCAGCAAAAGAAGGACACGTGGACCTGGTCCAGGAGCTGCTGGACAGGGGGTCTTCAGTTGATTCTGCAACCAAGAAGGGAAATACAGCTCTCCACATTGCTTCACTAGCAGGACAAGGAGAAGTTGTAAAGATCCTGGTCAAGAGGGGAGCGGACATAAACGCCCAATCTCAGAATGGATTCACTCCCTTGTACATGGCTTCTCAAGAAAACCATTTAGATGTGGTGCGTTATCTTNNNNNgaataataataagatttcTTTGCTTATGTCAAATATACCCAGAGAGCATCCAAATACTGATGGCTTCACACCTCTAGCTATTGCACTGCAACAAGGCCATAATCAGGTGGTGTCCATCCTTTTAGAGAATGACACGAAGGGCAAAGTACGTCTGCCTGCCTTACACATTGCAGCCCGCAAAGACGACACGAAGTCTGCTGCCCTGCTGCTCCAAAATGACCACAATGCCGATGTACAGTCTAAGATGATGGTCAATAGGACAACCGAGAATGGGAAGAGTGGATTCACACCCCTGCATATCGCTGCTCACTACGGAAATGTAAATGTCGCAACACTGCTCCTCAATCGAGGGGCCGCTGTGGACTTCACTGCAAGGAATGGGATCACGCCACTACATGTTGCGTCTAAGAGGGGAAACACTAATATGGTTCATCTGCTGTTGGACAGAGGGGCTCAGATTGATGCCAAAACAAGGGATGGCCTCACGCCCTTACACTGCGCAGCAAGAAGTGGGCATGACACCGCAGTGGAGCTCTTATTGGAGAGAGGAGCCCCTATGCTTGCCAGAACCAAGAACGGTTTATCTCCGCTCCACATGGCAGCGCAGGGTGACCATGTGGAGTGCGTCAAACACCTGAGCGGCAGTCACCGTCAGACCCTGTGTAAGCTGATCTGGGTGGTGGGCAGTGGACAAGCTCGGAGAAACTATGTTAGCAATGTGCTCATTGTAAGGAAAGATTATCTGGCTTATAACTCCTAG

Function

NR:

description
PREDICTED: ankyrin-2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2886 False 555 TUCP 0.41 5 8771108 8778892
XM_043236629.1 True 1221 mRNA 0.49 15 8762139 8780164

Neighbor

gene id symbol gene type direction distance location
rbpja rbpja,LOC107563830,LOC107742494,LOC107702317,LOC107562987 coding upstream 67590 8691140 ~ 8694549 (+)
slc34a2a slc34a2a,LOC107657019,LOC107742514,LOC107565308,LOC107714203,LOC107562975 coding upstream 75594 8680589 ~ 8686545 (+)
chic2 chic2,LOC103353160,LOC101486940,LOC107742496,LOC107714214,LOC107562985 coding upstream 88486 8669396 ~ 8673653 (+)
fip1l1b fip1l1b,LOC107692590,LOC107742498,LOC107702315,LOC107714215 coding upstream 93520 8660735 ~ 8668619 (+)
LOC122350473 LOC107692703,LOC107742499,LOC107562963,LOC107702261,LOC107714199,LOC107563851 coding upstream 102092 8655536 ~ 8660047 (+)
LOC122350130 fgf20a,fgf20,LOC107747399,LOC107721420,LOC107702330,LOC107657011,LOC107562923,LOC106602193 coding downstream 20153 8800317 ~ 8802624 (+)
LOC122352717 NA coding downstream 263333 9043497 ~ 9044968 (+)
pcdh7a pcdh7a,LOC107742492,LOC107656832,LOC107702324,LOC107750039,LOC107562921,LOC108415078,LOC105908367 coding downstream 417720 9197884 ~ 9229837 (+)
itln1 NA coding downstream 453862 9234026 ~ 9236917 (+)
hgsnat hgsnat,LOC107565475,LOC107656620,LOC107702325,LOC107562920 coding downstream 457529 9237693 ~ 9252170 (+)
G1979 NA non-coding upstream 19618 8740832 ~ 8742521 (+)
G1977 LOC107758879 non-coding upstream 31745 8730057 ~ 8730394 (+)
G1971 NA non-coding upstream 48104 8712174 ~ 8714035 (+)
G1968 NA non-coding upstream 64729 8695957 ~ 8697410 (+)
G1902 camk2d2,LOC107563926,LOC107742503,LOC107714220,LOC107562980 non-coding upstream 183778 8525581 ~ 8578361 (+)
LOC122352408 NA non-coding downstream 250659 9030823 ~ 9031823 (+)
LOC122352814 NA non-coding downstream 271744 9051908 ~ 9053473 (+)
LOC122353659 NA non-coding downstream 281797 9061961 ~ 9062609 (+)
G2149 NA non-coding downstream 1004054 9784218 ~ 9787161 (+)
G2219 NA non-coding downstream 1298721 10078885 ~ 10079470 (+)
stim2a stim2a,LOC107742493,LOC107563819,LOC107656659,LOC107702263,LOC107714208,LOC107562986,LOC108441330 other upstream 56266 8700440 ~ 8705873 (+)
ppp2r2ca ppp2r2ca,LOC107692591,LOC107563918,LOC107742501,LOC108241547,LOC106531115 other upstream 127740 8623158 ~ 8634399 (+)
cxcl8a LOC107714205,LOC107702289,LOC107562973,LOC107692705,LOC107565350 other upstream 154354 8606825 ~ 8607785 (+)
pcdh10a pcdh10a,LOC107751533,LOC107557555,LOC107746446 other upstream 776524 7954711 ~ 7985615 (+)
spink4 LOC107758865,LOC107692710,LOC107723196,LOC107565379 other upstream 1040714 7720265 ~ 7721425 (+)
G2063 NA other downstream 254922 9035086 ~ 9035600 (+)
G2125 NA other downstream 628241 9408405 ~ 9412437 (+)
G2230 NA other downstream 1464993 10245157 ~ 10245578 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other downstream 1476498 10256662 ~ 10335202 (+)
G2253 NA other downstream 1617209 10397373 ~ 10398040 (+)

Expression


Co-expression Network