G2246 (LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191)


Basic Information

Item Value
gene id G2246
gene name LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10372962 ~ 10373847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3247
CTTTgaaacatgaacacacactACGCTGTAAAGCAATTAAGTACAATTAATTTGCCTCTAACAAAATCTAATATAAAGCAATACAATACGCGATTATAATTTGATCATTGATTGTGTGTCTTTATTTATGGATGAACCCACTAGGGTAAATATGTTTAGCTGAAATATTATCTCGGCAACAGCTCTGAATTACAAATGTACTAGTCACTGTAGCCATCATGTGTTTTAAACCTCTGACCTATTGACTCCTGTGGCTGAGCTGGTTCTTGGTCTGCTGGCTGTGACTGGATGTCCTGTGCTTGTCCATCAGGAGAGGGCGGTAGTCCAGGAGTCCAGACGGGTGTGTGTGAAGCGTAGAGAACACACTCCTCAGCTCTTCCTGGCTCTGACACACTCCTAACAGATGCAGCACAGCGCCCAGCTCAGCTGCAGACAGAAGCCCAGTGCTGGAGACATCCAGCCGGGCGCAGGCCTTGCTGATAGCCCTGGCCTTACGCTGGAGCTTTTTTTCTGATCTTGCCACTTAATGTTTCCGGAGCGGCTTCTTGTTTAGTTTCTCTAGGAGTCTGCAGAGCAGCCGCCATATTGGATCCGTGCTTCCATATTTGACTCTGGGATAGAAAAGGCTTGAGGAATTCTGTGTAGGATACACTGatataacaagaaaaaaaaatccatgagGGCGTGAAACGCTCAGTTATGTTTCATCTTATAGATGTGCATTCTCTATGAACTCTATTGCCAACACAGTCTCATACAAATTAGCCACTTCGcgaaatatgtacaaattgccTGGCTGGTA

Function

NR:

description
PREDICTED: EF-hand calcium-binding domain-containing protein 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3247 True 802 lncRNA 0.51 2 10372962 10373847

Neighbor

gene id symbol gene type direction distance location
helt helt,LOC107562737,LOC107656987,LOC107754167 coding upstream 5674 10365713 ~ 10367288 (+)
casp3a casp3,LOC107754122,LOC107656460,LOC107562747,LOC107746030,LOC107702336 coding upstream 31754 10336685 ~ 10341208 (+)
pcm1 pcm1,LOC107747390,LOC107721421,LOC107554391,LOC107702267 coding upstream 484303 9866164 ~ 9888659 (+)
mtus1b mtus1b,LOC107747391,LOC107656488,LOC107562915,LOC107721423,LOC107702266 coding upstream 509276 9827103 ~ 9863686 (+)
vps37a vps37a,LOC107656515,LOC107702331,LOC107747393,LOC107721427 coding upstream 567479 9799826 ~ 9805483 (+)
slc25a4 slc25a4,LOC107656452,LOC107562743 coding downstream 25489 10399336 ~ 10401667 (+)
ankrd37 ankrd37,LOC107754130,LOC107656428,LOC107746026,LOC107702343 coding downstream 35997 10409844 ~ 10412143 (+)
LOC122347771 cyp4v8,LOC107558204,LOC107754133,LOC107656409,LOC107562739,LOC108415372,LOC106602559 coding downstream 116415 10490262 ~ 10499474 (+)
LOC122347900 mtnr1aa,LOC107591561,LOC107656395,LOC107754134,LOC107702348,LOC107746022 coding downstream 305740 10679587 ~ 10682960 (+)
LOC122347952 chrna7,LOC107748270,LOC107679711,LOC107702399,LOC107686877,LOC107548356,LOC107655813,LOC107709454,LOC107562618 coding downstream 349469 10723316 ~ 10734854 (+)
G2219 NA non-coding upstream 293492 10078885 ~ 10079470 (+)
G2149 NA non-coding upstream 585801 9784218 ~ 9787161 (+)
LOC122353659 NA non-coding upstream 1310353 9061961 ~ 9062609 (+)
LOC122352814 NA non-coding upstream 1319489 9051908 ~ 9053473 (+)
LOC122352408 NA non-coding upstream 1341139 9030823 ~ 9031823 (+)
G2350 klhl2,LOC107591556,LOC107745059,LOC107702385,LOC107655955,LOC107750425,LOC107548347 non-coding downstream 453838 10827685 ~ 10837245 (+)
G2352 NA non-coding downstream 463778 10837625 ~ 10838465 (+)
G2354 NA non-coding downstream 574272 10948119 ~ 10982967 (+)
G2420 mtnr1aa,LOC107656395,LOC107591561,LOC107702348,LOC107754134 non-coding downstream 827285 11201132 ~ 11201666 (+)
G2430 NA non-coding downstream 936746 11310593 ~ 11315354 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 37760 10256662 ~ 10335202 (+)
G2230 NA other upstream 127384 10245157 ~ 10245578 (+)
G2125 NA other upstream 960525 9408405 ~ 9412437 (+)
G2063 NA other upstream 1337362 9035086 ~ 9035600 (+)
LOC122342651 LOC107702307,LOC103385245,LOC102791586,LOC107103578,LOC107559840 other upstream 1592798 8762139 ~ 8780164 (+)
G2253 NA other downstream 23526 10397373 ~ 10398040 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other downstream 109793 10483640 ~ 10490084 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other downstream 471109 10844956 ~ 10981356 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 1338093 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 1400109 11773956 ~ 11783070 (+)

Expression


Co-expression Network