G2352


Basic Information

Item Value
gene id G2352
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10837625 ~ 10838465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3431
caggtgtgtgtgcGGTAAATAATCTGCTATATGTGATTGGTGGAGATGATGGCTCATGCAACCTGGCTTCAGTGGAGTTCTACAATCCAAACACTGATAAATGGACTCTGCTGCCCACCTGCATGAGCACAGGACGCAGCTACGCAGGTGTGACTGTCATTGATAAGCCTCTCTGAGCAGCTGTGAAGTTGTTGAACACTAGAGCTGAAGCTGACGTACAGCAGAGGATTCGCTCACACTGAAGCACTTAACCACGACTGAGGCTTCATCCTGGATCTGCTTCACCATGGACATGGCCTGGAGAatactgctctctctctctgtctctctctctctctctctctgtctgtctctctctctctctctctctctctctctcacacccaTTCATATACGTAACTACAAACATTCACACACTACCTCTTTTTGTCTCTagtacacactcacacactctgcatctctcttttctttctgtttctcttgtTTGAGAGTAGTCAACGATGACGTTTATTGCACTTTGAGGAGCACTGACGAAGCAGAATCGAAACACTCTGAGAAAAGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU3431 True 562 lncRNA 0.46 3 10837625 10838465

Neighbor

gene id symbol gene type direction distance location
LOC122347952 chrna7,LOC107748270,LOC107679711,LOC107702399,LOC107686877,LOC107548356,LOC107655813,LOC107709454,LOC107562618 coding upstream 102771 10723316 ~ 10734854 (+)
LOC122347900 mtnr1aa,LOC107591561,LOC107656395,LOC107754134,LOC107702348,LOC107746022 coding upstream 154665 10679587 ~ 10682960 (+)
LOC122347771 cyp4v8,LOC107558204,LOC107754133,LOC107656409,LOC107562739,LOC108415372,LOC106602559 coding upstream 338151 10490262 ~ 10499474 (+)
ankrd37 ankrd37,LOC107754130,LOC107656428,LOC107746026,LOC107702343 coding upstream 425482 10409844 ~ 10412143 (+)
slc25a4 slc25a4,LOC107656452,LOC107562743 coding upstream 435958 10399336 ~ 10401667 (+)
LOC122347879 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding downstream 1963 10840428 ~ 10844345 (+)
LOC122347755 chrna6,LOC107655806,LOC107548359,LOC107709456,LOC107750436 coding downstream 224147 11062612 ~ 11076698 (+)
LOC122342727 chrnb3a,LOC107562617,LOC107709455,LOC107548357,LOC107655822,LOC107702298,LOC107750476 coding downstream 265672 11104137 ~ 11121875 (+)
LOC122342742 adgrl3.1,LOC107709467,LOC107702411,LOC107671918,LOC108437730 coding downstream 284615 11123080 ~ 11143007 (+)
si:dkey-192k22.2 NA coding downstream 456946 11295411 ~ 11302485 (+)
G2350 klhl2,LOC107591556,LOC107745059,LOC107702385,LOC107655955,LOC107750425,LOC107548347 non-coding upstream 380 10827685 ~ 10837245 (+)
G2246 LOC107754123,LOC107562734,LOC107746042,LOC107702337,LOC107558191 non-coding upstream 463778 10372962 ~ 10373847 (+)
G2219 NA non-coding upstream 758155 10078885 ~ 10079470 (+)
G2149 NA non-coding upstream 1050464 9784218 ~ 9787161 (+)
LOC122353659 NA non-coding upstream 1775016 9061961 ~ 9062609 (+)
G2354 NA non-coding downstream 109654 10948119 ~ 10982967 (+)
G2420 mtnr1aa,LOC107656395,LOC107591561,LOC107702348,LOC107754134 non-coding downstream 362667 11201132 ~ 11201666 (+)
G2430 NA non-coding downstream 472128 11310593 ~ 11315354 (+)
G2449 NA non-coding downstream 500830 11339295 ~ 11341748 (+)
G2454 NA non-coding downstream 512435 11350900 ~ 11351657 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 347541 10483640 ~ 10490084 (+)
G2253 NA other upstream 439585 10397373 ~ 10398040 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 502423 10256662 ~ 10335202 (+)
G2230 NA other upstream 592047 10245157 ~ 10245578 (+)
G2125 NA other upstream 1425188 9408405 ~ 9412437 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other downstream 6491 10844956 ~ 10981356 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 873475 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 935491 11773956 ~ 11783070 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other downstream 999141 11837606 ~ 11844060 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 1806214 12644679 ~ 12658507 (+)

Expression


Co-expression Network