G2377


Basic Information

Item Value
gene id G2377
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 10837968 ~ 10839302 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3464
TCGGTGACAGTAGTTTAAGAgagttaaatattaaacagcaagaGCAGTATAGAGAAAGccattaaaattacagaaaacaaagacagaaaaaaagattaaagaagaggagaacaaaaacagagtgaaagagagaaaagaaagaaagatttataTAAGAATTAGTACCTTTATACCTCTTCAGTGTTCAATACCGCTAGTACAGATAGCACATCACGTTGTTTAGTGAGTACAGCAGTAGTTTAAAGATGGCACACAAACATCAGTATTTAGAACCATGCAAAGCGGTTTAATACCCAAGCAACCAGCATCAGTCCACAGTATCGTGCATGCCGAAGCATTCATGTTAACGTTTCAAATATCAAAGATTGCAATTCTCCAACAATCGGACCACAAGAAAAAAGCCAgagaatattaaaagaaaaaaagaaacaacaacagacaGTTCAAACTTTAAGACTTCAAATGTCGTTTGGCAAAcaaattgcaaaatgtaaaagtttgtaCGTCTTCATAACAGAGTCCCTTCTCGCATATAGGCAAGCCAAGGTTCAGCTCTAACCATAAAACGAAATTCACatcatcgtcatcttcatcatcatccagtcttCATAATGAAGATGGAGTCCAGTGACTTCAATAAACCACTTTCCAAGAGGCAACAAAGTGCTGGTCCTAAACTAGACGCATTTTCCCCTCAAACTTCAAATAAGCAAAAACCAGCAAGACGCTCCTTCAGATCCAAAGATCAAGCAGCAGAAATGGCTGGCCATCCCCTCggctcaaaacgcaggaacgcTTTGTACACGTCGCAGATGCGCTGGCGAACATTTGCACCAGTCTTTTCTCAGAGTGTTTCGATTCTGCTTCGTCAGTGCTCCTCAAAGTGCAATAAACGTCATCGTTGACTACTCTCAAacaagagaaacagaaagaaaagagagatgcagagtgtgtgagtgtgtactAGAGACAAAAAGAGGTAGTGTGTGAATGTTTGTAGTTACGTATATGAAtgggtgtgagagagagagagagagagagagagagagagagacagacagagagagagagagagagagacagagagagagagcagtatTCTCCAGGCCATGTCCATGGTGAAGCAGATCCAGGATGAAGCCTCAGTCGTGGTTAAGTGCTTCAGTGTGAGCGAATCCTCTGCTGTACGTCAGCTTCAGCTCTAGTGTTCAACAACTTCACAGCTGCTCAGAGAGGCTTATCAATGACAGTCACA
>TU3465
TCGGTGACAGTAGTTTAAGAgagttaaatattaaacagcaagaGCAGTATAGAGAAAGccattaaaattacagaaaacaaagacagaaaaaaagattaaagaagaggagaacaaaaacagagtgaaagagagaaaagaaagaaagatttataTAAGAATTAGTACCTTTATACCTCTTCAGTGTTCAATACCGCTAGTACAGATAGCACATCACGTTGTTTAGTGAGTACAGCAGTAGTTTAAAGATGGCACACAAACATCAGTATTTAGAACCATGCAAAGCGGTTTAATACCCAAGCAACCAGCATCAGTCCACAGTATCGTGCATGCCGAAGCATTCATGTTAACGTTTCAAATATCAAAGATTGCAATTCTCCAACAATCGGACCACAAGAAAAAAGCCAgagaatattaaaagaaaaaaagaaacaacaacagacaGTTCAAACTTTAAGACTTCAAATGTCGTTTGGCAAAcaaattgcaaaatgtaaaagtttgtaCGTCTTCATAACAGAGTCCCTTCTCGCATATAGGCAAGCCAAGGTTCAGCTCTAACCATAAAACGAAATTCACatcatcgtcatcttcatcatcatccagtcttCATAATGAAGATGGAGTCCAGTGACTTCAATAAACCACTTTCCAAGAGGCAACAAAGTGCTGGTCCTAAACTAGACGCATTTTCCCCTCAAACTTCAAATAAGCAAAAACCAGCAAGACGCTCCTTCAGATCCAAAGATCAAGCAGCAGAAATGGCTGGCCATCCCCTCggctcaaaacgcaggaacgcTTTGTACACGTCGCAGATGCGCTGGCGAACATTTGCACCAGTCTTTTCTCAGAGTGTTTCGATTCTGCTTCGTCAGTGCTCCTCAAAGTGCAATAAACGTCATCGTTGACTACTCTCAAacaagagaaacagaaagaaaagagagatgcagagtgtgtgagtgtgtactAGAGACAAAAAGAGGTAGTGTGTGAATGTTTGTAGTTACGTATATGAAtgggtgtgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagcagtatTCTCCAGGCCATGTCCATGGTGAAGCAGATCCAGGATGAAGCCTCAGTCGTGGTTAAGTGCTTCAGTGTGAGCGAATCCTCTGCTGTACGTCAGCTTCAGCTCTAGTGTTCAACAACTTCACAGCTGCTCAGAGAGGCTTATCAATGACAGTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3464 False 1255 lncRNA 0.41 2 10837968 10839302
TU3465 True 1257 lncRNA 0.32 2 10837968 10839302

Neighbor

gene id symbol gene type direction distance location
LOC122347847 kdm4c,LOC107655842,LOC107709452,LOC107548355,LOC107750465,LOC107570226 coding downstream 31837 10800296 ~ 10806131 (-)
sorbs2a sorbs2a,sorbs2,LOC107746024,LOC107562741,LOC107754131,LOC107702341,LOC107656785 coding downstream 366021 10425765 ~ 10471947 (-)
pdlim3a pdlim3,pdlim3a,LOC107754177,LOC107656980,LOC107746050,LOC107702342 coding downstream 414427 10418632 ~ 10423541 (-)
si:dkey-256e7.8 LOC107577660,LOC107754169,LOC107656796 coding downstream 420402 10416760 ~ 10417566 (-)
ufsp2 ufsp2,LOC107754127,LOC107656418,LOC107562733,LOC107746025,LOC107702344 coding downstream 421771 10411890 ~ 10416197 (-)
LOC122347963 msmo1,LOC107655978,LOC107745062,LOC107548349,LOC107750426,LOC107591587,LOC107702386 coding upstream 142792 10982094 ~ 10986019 (-)
fam114a1 LOC107754137,LOC107656378,LOC107702351,LOC107746018,LOC107591522 coding upstream 463179 11302481 ~ 11310122 (-)
klf3 klf12,LOC107565970,LOC107656370,LOC107754179,LOC107702350,LOC107746019 coding upstream 471291 11310593 ~ 11324338 (-)
tbc1d1 tbc1d1,LOC107754138,LOC107656363,LOC107702353,LOC107746016 coding upstream 497257 11336559 ~ 11382357 (-)
pgm2 pgm2,LOC107551595,LOC107591526,LOC107746017 coding upstream 544489 11383791 ~ 11393826 (-)
G2374 NA non-coding downstream 11189 10826542 ~ 10826779 (-)
G2369 NA non-coding downstream 12216 10824795 ~ 10825752 (-)
G2328 NA non-coding downstream 158951 10678810 ~ 10679017 (-)
G2327 NA non-coding downstream 159446 10678175 ~ 10678522 (-)
G2293 NA non-coding downstream 530253 10307504 ~ 10307715 (-)
G2381 cpe,LOC107548348,LOC107745061,LOC107591555,LOC107750458 non-coding upstream 22263 10861565 ~ 10866048 (-)
G2391 NA non-coding upstream 159032 10998334 ~ 10999085 (-)
LOC122347981 NA non-coding upstream 165471 11004773 ~ 11006904 (-)
G2532 NA non-coding upstream 359276 11198578 ~ 11198808 (-)
G2630 NA non-coding upstream 872671 11711973 ~ 11712523 (-)
LOC122347618 kdm4c,LOC107655842,LOC107709452,LOC107702398,LOC107548355,LOC107750465,LOC107570226 other downstream 23893 10806569 ~ 10814075 (-)
LOC122347930 dnah6,LOC106610484 other downstream 38359 10734970 ~ 10799609 (-)
G2302 slc25a4,LOC107656452,LOC107562743 other downstream 436282 10357181 ~ 10401686 (-)
LOC122351550 LOC107656542,LOC107747394,LOC107562929,LOC107721426,LOC107707229,LOC107658053,LOC107751937,LOC107661411 other downstream 2039613 8779212 ~ 8798355 (-)
G1926 NA other downstream 2230173 8556040 ~ 8607795 (-)
G2382 cpe,LOC107591555,LOC107745061,LOC107548348 other upstream 114573 10953875 ~ 10981366 (-)
G2401 NA other upstream 213852 11053154 ~ 11053941 (-)
klhl5 klhl5,LOC107565971,LOC107754136,LOC107746020,LOC107656383,LOC107702349,LOC108412945 other upstream 402729 11242031 ~ 11293048 (-)
LOC122343263 NA other upstream 556432 11395734 ~ 11396576 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other upstream 568263 11407565 ~ 11411713 (-)

Expression


Co-expression Network