apela


Basic Information

Item Value
gene id apela
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11783629 ~ 11788666 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU3890
CTCTTGTCTGTATAAAGAGGGGGTGAAGCTACATTGTCTCGACTGGACATTCACACTCATCAggtcatctgtctatctatccatccctctggggagagagaagagagagagagagagtgaatatCGCCATCTGAAACTCTGGAAAAGTTGGAAGCCTGAGAACCGACTTGAGCTGCGCATTCACTATAGCGGCAACTCATACGAGTTCAGAGAAAAATTAACGAGACCGACGGAGACATAACAGGATTTGAAGGTTACCTGCGTGCTCTCACAGATACCGGAGACTCCTGAGGACACTCGGGTCTGACTCTCACAGCATCACCATGAGATTCTTCCATCCTCTCTATCTCCTTCTGCTGCTGCTCACAGTCCTGTTCATCACCAGCGCCGAGAGACAAGATTTCCTCAACCTGAGGCGGAAATACCGCAGACACAACTGTCCAAAAAAACGCTGTCTGCCTCTTCACTCCAGAGTGCCATTCCCTTGAGGTTTCACAACTACTCAAGTCCGCAACTATGACGTCTTGTCAAGCCTTAAGAAAACCAAAGATCACAGTGATGGATGGGAAATGGGAGAGGAGTTTCATATCAGACTCGCCGAGGACTGTTTGTTTGCCTGTATACAGTAATCAAGCCACGCTAGTCACTTCTGCAAAGGAAGTGTGTTGTTTTATGAATGTTAAGCGAATAAGCCATGGGGGCATCAACTGCAACCAAACATGCTGAAAACTCATCGCCCGACCGGTTCGAGTTTGTCAGAATCATTGTAAATAGTAAAAACtgatatgtgtttatatgtaagTTATGcacttcaaatgttttattattatcctgattaaataaaaaagtgtattGTCTTTT
>XM_043225008.1
TACTCTAATCAAATGTAAGATTGTTTAAACAAAAGTTCTCAAGATCTGATATTGTTTTGACAAAATATAAGACATTAAGATTCAATAAAAAGATTAGCAAtagcatttaaagggaaaataaattaaaacagaagtATTTTGACTATTCTCTGATTTTGGACAGCATTGTAAATCATTCGAAAACACTGTACACaacaaaatatacacatatgtagTGTGCTCAAATTATGAGATCATAAGTATGATctccaaaaaaaatctttctgtgCTTTTTTACCTAATACATGTGGGGTCAATATGTGCAatgcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagagagatgtccCATGTCCCCACCCAGTTTTTGGTTTTCCATACCCCTCCTTCTGTTGTACCCTCTCCTCCCCCTTTCTCTTGTCTGTATAAAGAGGGGGTGAAGCTACATTGTCTCGACTGGACATTCACACTCATCAggtcatctgtctatctatccatccctctggggagagagaagagagagagagagagtgaatatCGCCATCTGAAACTCTGGAAAAGTTGGAAGCCTGAGAACCGACTTGAGCTGCGCATTCACTATAGCGGCAACTCATACGAGTTCAGAGAAAAATTAACGAGACCGACGGAGACATAACAGGATTTGAAGGTTACCTGCGTGCTCTCACAGATACCGGAGACTCCTGAGGACACTCGGGTCTGACTCTCACAGCATCACCATGAGATTCTTCCATCCTCTCTATCTCCTTCTGCTGCTGCTCACAGTCCTGTTCATCACCAGCGCCGAGAGACAAGATTTCCTCAACCTGAGGCGGAAATACCGCAGACACAACTGTCCAAAAAAACGCTGTCTGCCTCTTCACTCCAGAGTGCCATTCCCTTGAGGTTTCACAACTACTCAAGTCCGCAACTATGACGTCTTGTCAAGCCTTAAGAAAACCAAAGATCACAGTGATGGATGGGAAATGGGAGAGGAGTTTCATATCAGACTCGCCGAGGACTGTTTGTTTGCCTGTATACAGTAATCAAGCCACGCTAGTCACTTCTGCAAAGGAAGTGTGTTGTTTTATGAATGTTAAGCGAATAAGCCATGGGGGCATCAACTGCAACCAAACATGCTGAAAACTCATCGCCCGACCGGTTCGAGTTTGTCAGAATCATTGTAAATAGTAAAAACtgatatgtgtttatatgtaagTTATGcacttcaaatgttttattattatcctgattaaataaaaaagtgtattG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3890 False 861 lncRNA 0.46 3 11783629 11788233
XM_043225008.1 True 1288 mRNA 0.41 3 11783635 11788666

Neighbor

gene id symbol gene type direction distance location
polr1e polr1e,LOC107754182,LOC107754175 coding downstream 54365 11725127 ~ 11729264 (-)
ecpas kiaa0368,LOC107702367,LOC107551559,LOC107656759 coding downstream 72826 11693517 ~ 11710803 (-)
kitb kitb,LOC107754153,LOC107656054,LOC107746005,LOC107702363,LOC107591536 coding downstream 116895 11654904 ~ 11666734 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107746009,LOC107702362,LOC107591534 coding downstream 141421 11636160 ~ 11642208 (-)
rbm47 rbm47,LOC107656158,LOC107754149,LOC107702361,LOC107746010 coding downstream 151986 11608561 ~ 11631643 (-)
tma16 tma16,LOC107754160,LOC107551564,LOC107656272 coding upstream 27810 11816476 ~ 11818872 (-)
grhprb grhprb,LOC107702374,LOC107656243,LOC107754183,LOC107591546,LOC108444366 coding upstream 58341 11847007 ~ 11850655 (-)
LOC122351032 LOC107754184,LOC107551556,LOC107656104 coding upstream 122084 11910750 ~ 11918207 (-)
mettl14 mettl14,LOC107591585,LOC107754186 coding upstream 134454 11923120 ~ 11926822 (-)
ndst3 ndst3,LOC107551574,LOC107591550,LOC107702380,LOC107750457,LOC108439183,LOC108260488,LOC107656734 coding upstream 171704 11960370 ~ 12094894 (-)
G2665 NA non-coding downstream 12122 11771236 ~ 11771507 (-)
G2664 NA non-coding downstream 12652 11770764 ~ 11770977 (-)
G2663 NA non-coding downstream 13045 11769442 ~ 11770584 (-)
G2644 NA non-coding downstream 16971 11766398 ~ 11766658 (-)
G2640 NA non-coding downstream 26314 11744818 ~ 11757315 (-)
LOC122328967 NA non-coding upstream 5149 11793815 ~ 11795993 (-)
G2690 NA non-coding upstream 60956 11849622 ~ 11910010 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding upstream 138885 11927551 ~ 11928996 (-)
G2750 NA non-coding upstream 354240 12142906 ~ 12150716 (-)
G2826 NA non-coding upstream 501163 12289829 ~ 12290106 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 202912 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 270796 11510439 ~ 11512833 (-)
zgc:195282 zgc:195282,LOC107591529,LOC107702293,LOC107754142,LOC108413380,LOC107656338,LOC108260812 other downstream 371916 11407565 ~ 11411713 (-)
LOC122343263 NA other downstream 387053 11395734 ~ 11396576 (-)
klhl5 klhl5,LOC107565971,LOC107754136,LOC107746020,LOC107656383,LOC107702349,LOC108412945 other downstream 490581 11242031 ~ 11293048 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other upstream 309244 12097910 ~ 12117383 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other upstream 549296 12337962 ~ 12366108 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 1115533 12904199 ~ 12926482 (-)
smim18 NA other upstream 1180427 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 1365820 13154486 ~ 13159444 (-)

Expression


Co-expression Network