LOC122348535 (ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581)


Basic Information

Item Value
gene id LOC122348535
gene name ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12427167 ~ 12443883 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4113
TAAACATTAACTATCCGTTTAAACTTTATAATTCGATTAAAAACAATCGGGTTTACTGTATCACTACATAGTCATActatataatacacatataatCACATCTTGTGTCAACTTAACGAGCAGCCTGCGTCTTTTTGGGGGGCGTTATTAACGAGAGCGACCATATCGTGTTGACTTTTTGACATGTTTCAGCCTGGGTGGATGCAGTGTGGGATTTCGAGTTCACGCACACAGACCCTCTTGACCCAGTTATTGAGGAGGAGATAAAGGAAGGCCCTGatgttttcaaaacaatttaCGTGCAGCTTTTGCCCTTCTCCAATGAGGAGGATGACAATACACAGAGTGTCTGGGTGGTGTTCGGTGAGAACGGAGTCTCTGCAAAAACTGTCCTTTCCTACTTCATCCTTGGTGCTAAAACCAGAAGTCCCAGTCTTGAACAGAGACTATGTGGTCTACAGGCAGCCTCTCTATACTTGTTGTTGCTAAAAATACCTGgtagtttatgtggttttgAGCATTGTAAATCACAGTACTTTGCTGGATATCTGATGAGCACACTACTGAGTGCACTGCAGCACTGCAGGGCATCGACTCCAAGACTGTGATCCTACTGGGAAAAGTTGCACTCTGGGTGATGGTTTTTGCATATGATAGATTTGTCCAGCATCACCATGGCACAGTGAGACGGAGAGCTTATCTggacttctacagactgacCCGCAGAATAAAAAACCTTCCACTGCTCATTCACTCTGCAGGTGAAAATATATGTTTCGCATTATGATGTTAACATTCCAC
>XR_006251338.1
aaaacgaaataaagtatttacttaatattcatgagctccCTGCGTATGTCGCCGAGCATAGCATAGCAGATAAACATTAACTATCCGTTTAAACTTTATAATTCGATTAAAAACAATCGGGTTTACTGTATCACTACATAGTCATActatataatacacatataatCACATCTTGTGTCAACTTAACGAGCAGCCTGCGTCTTTTTGGGGGGCGTTATTAACGAGAGCGACCATATCGTGTTGACTTTTTGACATGTTTCAGCCTGGGTGGATGCAGTGTGGGATTTCGAGTTCACGCACACAGACCCTCTTGACCCAGTTATTGAGGAGGAGATAAAGGAAGGCCCTGatgttttcaaaacaatttaCGTGCAGCTTTTGCCCTTCTCCAATGAGGAGGATGACAATACACAGAGTGTCTGGGTGGTGTTCGGTGAGAACGGAGTCTCTGCAAAAACTGTCCTTTCCTACTTCATCCTTGGTGCTAAAACCAGAAGTCCCAGTCTTGAACAGAGACTATGTGGTCTACAGGCAGCCTCTCTATACTTGTTGTTGCTAAAAATACCTGgtagtttatgtggttttgAGTATTGTAAATCACAGTACTTTGCTGGATATCTGATGAGCACACTACTGAGTGCACTGCAGCACTGCAGGGCATCGACTCCAAGACTGTGATCCTACTGGGAAAAGTTGCACTCTGGGTGATGGTTTTTGCATATGATAGATTTGTCCAGCATCACCATGGCACAGTGAGACGGAGAGCTTATCTggacttctacagactgacCCGCAGAATAAAAAACCTTCCACTGCTCATTCACTCTGCAGGTGAAAACATATGTTTCGCATTATGTTAACATTCCACTCCTGGTCATTAAGTGAAAAGTTGCTCATGCTAATCGAAGTACTCTTTCAGTCACatgttaaatgcttgttagggttcacaactgaccactagatggcagcagaaaagCTATTATTGAATGTGAGGGACCGAG

Function

symbol description
ncapd3 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in meiotic chromosome condensation and mitotic chromosome condensation. Predicted to act upstream of or within cell division and chromosome condensation. Predicted to be located in nucleus. Predicted to be active in condensed chromosome, centromeric region. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly. Orthologous to human NCAPD3 (non-SMC condensin II complex subunit D3).

NR:

description
PREDICTED: condensin-2 complex subunit D3-like

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4113 False 801 lncRNA 0.43 3 12427167 12443813
XR_006251338.1 True 1001 lncRNA 0.42 3 12442491 12443883

Neighbor

gene id symbol gene type direction distance location
ncapd3 ncapd3,LOC107655906,LOC107709432,LOC107750432,LOC107702392 coding downstream 7887 12407369 ~ 12419280 (-)
wdr19 wdr19,LOC107591558,LOC107750430 coding downstream 20612 12390944 ~ 12406555 (-)
glrba glrba,LOC107702391,LOC107591559,LOC108443987,LOC107655919,LOC107548353 coding downstream 37450 12368875 ~ 12389717 (-)
tmem144a tmem144a,LOC107656881,LOC107548314,LOC107745069,LOC108443989 coding downstream 109976 12312334 ~ 12317191 (-)
npy1r npy1r,LOC107591578,LOC107548312,LOC107656908,LOC107702283 coding downstream 118458 12292229 ~ 12308709 (-)
adamtsl7 LOC107709448,LOC107750434,LOC107702297,LOC107570220 coding upstream 33635 12477518 ~ 12494325 (-)
zcchc7 LOC107709449,LOC107655886,LOC107548354 coding upstream 55888 12499771 ~ 12544141 (-)
melk melk,LOC107709443,LOC107702285,LOC107570222 coding upstream 163883 12607766 ~ 12617282 (-)
LOC122348170 frmpd1,LOC107709451,LOC107655878,LOC107548301,LOC107750435,LOC107702397,LOC107570223 coding upstream 174600 12618483 ~ 12643576 (-)
chrna8 LOC107709454,LOC107655813,LOC107548356,LOC107562618,LOC107702399,LOC108410819 coding upstream 280691 12724574 ~ 12772830 (-)
G2829 NA non-coding downstream 90408 12335352 ~ 12336759 (-)
G2826 NA non-coding downstream 137061 12289829 ~ 12290106 (-)
G2750 NA non-coding downstream 276451 12142906 ~ 12150716 (-)
G2742 prss12,LOC107551563,LOC107754187,LOC107656290,LOC107702379,LOC107591549,LOC107750419 non-coding downstream 498171 11927551 ~ 11928996 (-)
G2690 NA non-coding downstream 517157 11849622 ~ 11910010 (-)
G2841 NA non-coding upstream 10348 12454231 ~ 12454769 (-)
G2842 NA non-coding upstream 11471 12455354 ~ 12455572 (-)
G2882 NA non-coding upstream 106039 12549922 ~ 12550239 (-)
G2889 NA non-coding upstream 148558 12592441 ~ 12595294 (-)
G2891 NA non-coding upstream 173885 12617768 ~ 12618042 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 61059 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 309784 12097910 ~ 12117383 (-)
apela NA other downstream 638501 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 846450 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 914334 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 460316 12904199 ~ 12926482 (-)
smim18 NA other upstream 525210 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 710603 13154486 ~ 13159444 (-)
G3072 NA other upstream 847413 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 1385580 13829463 ~ 13842664 (-)

Expression


Co-expression Network