G2889


Basic Information

Item Value
gene id G2889
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12592441 ~ 12595294 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4170
TGTATCAGGGATCAGGAGGAATGCCAGACAATTGAATAACCCTGAACGACAGtaaaacaaacgaacaaaaatcatcatcataataaaaaataataacaataataatataacagttTAATTCCATTAGAAAATCAATatcaaatcacatttatttccaGCTTGTGGACAGATTcgaataaaatgaagaaaaagaagtcaTGAACAACCAAAAAGATTGAAATCAAGTGGCATGATATCTTTGGCAAATTTTGTTCTGCagtaaatacattcaaatattaagACAACACACGACACGCAGAGAAAAAAcaccaagatttttttttttactactagaaaattcaataaaaaacatacacatttcTTAAAGAAGCAGTTCATTCATTTACTCGTCGCAAACATCTGTTGCCTTCGTCTTTCTGTCATGTTGATTAGTtcataatttgaatatttttgcaatgatcgccagaaaatacttttaaaccAAGCATCTCTAACTTTGGTGGATGCTACAGATATGTTATTggtctgactttttttttttttttccctttgaatTGAACTGATTGCTGTTATCAAATTTGTCAAAACGTTTCAAGCTTTCTTAAAATCTTTAATCTTTACTTCAAAAACTGAGTAAAAAATACCTATGAACCCCTTGGGAAAGAAACTATTAGCAAGTAATTACAGAAGGAGCTTCCGATTGTACACAGAAGGCCACAATAAGGTGATAACCAAGTCCtctgttgttatttattattttttaaagtctgCTTTTTAAATTGGGAAACTTTTAATGTTGATGCGGACATACCGCTTTTGGAATAAATGCATTCCTGTTTTGGAATTCTAAACCAAATTTGTTCATTTGGAAAATGAAGTAAAGTCAAATAGTATTTGTCTCACATATTCCTGACTAACAATAAATTGGGGGGTCGTTggctgaatgaatcagttatGATGCTTAGCCTTTACgttgcaaatattttaaatatggagTCATCACTAAACCGTATTTAGAGAGTAGGTATACTTAAACGCTGGGTATTTATTTAGCCACTTTTTTCGGTGAAtaagagagaatgagaaaaatagTCCTATTAATTGACCTCTTTGTCAGTTTTGTGTAATTGTCTGCTAGTGatctaaaatattaagtatgAAATGTGCAAAGGAAAACATGGATGCATACATATAATTAACTGCTAATATTATGAGGTGCCGTTTAAAATTGGtgcattttctatatttaaaaaaaaaaacaaaaaggaaatgcAACTTCTGTAATCTTCTCAGAGAAAATGGGAAATTTTCACAAAGGTGATCAACGGCTAACATGTAGAATTTGTAATCCTTGATGGCATTGGAGGAAGGGGTTAGGAAGGGGTTAGGACGATCTGATCAGATTAAAGGTGCACCAGAGAGGCAAATGGAGTTACGTGGTGGGGGTGGAAATAAGAAATTGAAATAAGAGGGGATGGCAAAAGAGAAAGGGGTGTTGGATTTTTGCTGGTGCAGCAGGTTTTGATCATGTCAATGGAGAGGTGTGGCATATTCATGACCTGATGAAGGACAAAaggactgtgtgtgtatttcatttGTATCTGTCTAATCCAACAGGAACACCCAGAACGTCCATTTGAacatatatgtgaccctggaccacaaaaccagtcatgaggGATTTTAAAATTGAGATGTATACATGGAAGCTGGaagctaaataaatatgctttccatTGTTTTATGCTTTGTTCGGATATGAAATTagttggccgagatacaactacgaatatctggaatctgaggtaTCGAGAAAATCGCTTTTGAAGATGtccttagcgatgcatattactaatcaaaaatgaagttctgatatatttacagtaggaaattcgctaaatatcttaatggaacatgatctacacttaatatactaatgatttttagcataaaagaaaaatcaatacttttgaatataattttttttgttattgctatatatactcgtgctacttatgactggttctGTGGTACAGggtcacacactcacacacacacacacacacacacacatatacgacAAGACATTCCTTTCACAATTATCTAAAACTCATTCTCAGTGCttgaaggaacagttcaTTGTCATGTcgtacagaaaaaaacagctgttgGGTCTCAGAATATGTGAATTTTGACTAAATCTTGTATTAAATCTATGTTtagatttctgttttatattttaaataatagatcGATGTTTTATAATGGACGATAGTTTCTAAGTTGGTGTTAAATATGGAATagatttatattagttttatattttgccTCCATGTTGTTTGCTGGGTTTTGAATAGATTagcttgtaaaaaaagaaacagctaAAATGATGGGTAGTGGCATCTGTTTGCTGATTGGTCGGTCAAGCTGTGATCTTTTTTGCAATTTAGTGACGCGTGGTCATTCTGGATGACTCGGTAGAAAAATAAAGGCACTGTCCTTGATTTCAGCTGGTGTACTTCAGGTTCATAATGCCTCTGACTAAAAGTTTAAAAGGTCAAAGTTCACCAGTAGTCATTAGTGGTGAACGGCATCAAGGGTTTCTTTAGAGTTGCATAACGCGCAACTTATGATCTACAAACAAATGTAATCCTATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4170 True 2659 lncRNA 0.38 2 12592441 12595294

Neighbor

gene id symbol gene type direction distance location
zcchc7 LOC107709449,LOC107655886,LOC107548354 coding downstream 48300 12499771 ~ 12544141 (-)
adamtsl7 LOC107709448,LOC107750434,LOC107702297,LOC107570220 coding downstream 98116 12477518 ~ 12494325 (-)
LOC122342847 NA coding downstream 151996 12437822 ~ 12440445 (-)
LOC122342838 NA coding downstream 157543 12429730 ~ 12434898 (-)
ncapd3 ncapd3,LOC107655906,LOC107709432,LOC107750432,LOC107702392 coding downstream 173161 12407369 ~ 12419280 (-)
melk melk,LOC107709443,LOC107702285,LOC107570222 coding upstream 12472 12607766 ~ 12617282 (-)
LOC122348170 frmpd1,LOC107709451,LOC107655878,LOC107548301,LOC107750435,LOC107702397,LOC107570223 coding upstream 23189 12618483 ~ 12643576 (-)
chrna8 LOC107709454,LOC107655813,LOC107548356,LOC107562618,LOC107702399,LOC108410819 coding upstream 129280 12724574 ~ 12772830 (-)
chrnb3a chrnb3a,LOC107562617,LOC107655822,LOC107548357,LOC107709455,LOC107702298,LOC107750476 coding upstream 183295 12778589 ~ 12794404 (-)
chrna6 chrna6,LOC107709456,LOC107655806,LOC107750436,LOC108260984,LOC108412407 coding upstream 221461 12816755 ~ 12823474 (-)
G2882 NA non-coding downstream 42202 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 136869 12455354 ~ 12455572 (-)
G2841 NA non-coding downstream 137672 12454231 ~ 12454769 (-)
LOC122348535 ncapd3,LOC107709432,LOC107702392,LOC107750432,LOC107655906,LOC107591581 non-coding downstream 148558 12427167 ~ 12443883 (-)
G2837 NA non-coding downstream 149998 12426213 ~ 12442443 (-)
G2891 NA non-coding upstream 22474 12617768 ~ 12618042 (-)
G3020 NA non-coding upstream 291482 12886776 ~ 12887653 (-)
G3070 NA non-coding upstream 610493 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 699403 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 707459 13302753 ~ 13313529 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 226333 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 475058 12097910 ~ 12117383 (-)
apela NA other downstream 803775 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 1011724 11514151 ~ 11580717 (-)
G2584 LOC107656769,LOC107551593,LOC107746013,LOC107754144 other downstream 1079608 11510439 ~ 11512833 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other upstream 308905 12904199 ~ 12926482 (-)
smim18 NA other upstream 373799 12969093 ~ 12973012 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 559192 13154486 ~ 13159444 (-)
G3072 NA other upstream 696002 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 1234169 13829463 ~ 13842664 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G413134 NA non-coding CI01000300 null 8137690 ~ 8143059 (-)