smim18


Basic Information

Item Value
gene id smim18
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 12969093 ~ 12973012 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4359
gctggttcttttaagaaattgttaaaaacatGCAGTGGTTGTGAGTGCAAGTTCTCATTACTTTCAGTGAGGCCTTAAAATCAAGCAACTTTTTACGCACTGAAGGTTGGTGAAACAAATCATAGATGACTGATtgcttaaaagaaaacaatgcattatCTAAAGATGCTATTTTATGCTGCGTCTGAAAGCTGGAAATGCTGCCTCAGTGTGCAGAAGGAATTAATGTATCAGAATCCTATCAACATGTCACATTCTGCCCATCTGATCCATTTTTGAAGGATGCAcagatgtatgtatgtatgctcTAGCATCAcatcctcttcttcctccacACCCTGCTCTCAAACCCTGGCAACTGGAGCGTAGCCAGTCTCAGCCGCATCTTGGCACTGACTCATGAATGATTCATTGTGTGGGCGGGAACTAATGCTGAGAGCAGATGCGTTACGGTAGGTTGGATGGCTGACGCTTTGAATGACAGGACAGCCAGCCAATGGCGTCAGAGCACAGACTCAGAACAGCCAGTGCAACACACGGTTCCAGAATAAGGTGGGGCAGGGAGAGAGAGCGTGAGCGGCAAGAAAGACAACACTGAGACGAGCAAGAGGCTGCTCCATCACCCTGCATCCCAGACACTCACACCCAGATCTATCCCTTTCACGACGGCTGGAATGTTGCCTGcttcatcatcctcctcctcttcatcctcacCATCCTCTCCCTCGCCACGCTGGCATTCCTCTACGAGCTGCTGGACTGCGGCTGCTTCACCAAAACCAAAACCGTTCGTGACCTGCGCCGCCAGCGTGACGAGGTGGTTTAGTTGTAACCATGGTGACAGCGGACACAGTCTCCATAGGAACCACAACAGTAGATTGGTGGAAAAAGCTGCAGATTTGGACGGAGCTCTTCGCCAGATTGGGGTCCCTTAAAACACGCCAGACACATACAGAGACAGAAGCCCTCTACTCCCACAAGCTCCAACAGCAACAGACAGCGCAGGTGTCTCCAAGgcttaaaatattacatgagATTTAGACCAGAAagatgaggggaaaaaaaaaaaacgcgctTGTATGCTCATTGTCTCCTTATAGTCTGCATTCGGTATTTGAATACTATTGTGTGATGACTACATAAAACTGTTGTATTTTTTGAGGTCTGTTTACATGGATTTTCCCCTTTGTGTGGAATGACAAAGTTTACATGTTGgtattataaagttattattcTAGATTATGATTCTGCTACTTAAAGCAAAGAGCACACACTACATTTAAAGTAAAGGCAATGTTTTTAGGAGAGATTTATTATGTGAATAATAATAGTTCTATCAACACCGAGAAGCACATTAAAGGCCGATTGTTGCATCTTTGCAATGCCTTAAAgattgtgtgtttaaaatgatataataaaaatattatacaagcATGAGAAATGCGTGTTTCCCATCAGGGTCACAGAAGATATCTTCAGCTGCTAACAGTGCTTT
>XM_043244071.1
AGCCAGTGCAACACACGGTTCCAGAATAAGGTGGGGCAGGGAGAGAGAGCGTGAGCGGCAAGAAAGACAACACTGAGACGAGCAAGAGGCTGCTCCATCACCCTGCATCCCAGACACTCACACCCAGTATGAACATGTCCAGCAATTCTGCTCTGATCCAGCAGATCTATCCCTTTCACGACGGCTGGAATGTTGCCTGcttcatcatcctcctcctcttcatcctcacCATCCTCTCCCTCGCCACGCTGGCATTCCTCTACGAGCTGCTGGACTGCGGCTGCTTCACCAAAACCAAAACCGTTCGTGACCTGCGCCGCCAGCGTGACGAGGTGGTTTAGTTGTAACCATGGTGACAGCGGACACAGTCTCCATAGGAACCACAACAGTAGATTGGTGGAAAAAGCTGCAGATTTGGACGGAGCTCTTCGCCAGATTGGGGTCCCTTAAAACACGCCAGACACATACAGAGACAGAAGCCCTCTACTCCCACAAGCTCCAACAGCAACAGACAGCGCAGGTGTCTCCAAGgcttaaaatattacatgagATTTAGACCAGAAagatgaggggaaaaaaaaaaaacgcgctTGTATGCTCATTGTCTCCTTATAGTCTGCATTCGGTATTTGAATACTATTGTGTGATGACTACATAAAACTGTTGTATTTTTTGAGGTCTGTTTACATGGATTTTCCCCTTTGTGTGGAATGACAAAGTTTACATGTTGgtattataaagttattattcTAGATTATGATTCTGCTACTTAAAGCAAAGAGCACACACTACATTTAAAGTAAAGGCAATGTTTTTAGGAGAGATTTATTATGTGAATAATAATAGTTCTATCAACACCGAGAAGCACATTAAAGGCCGATTGTTGCATCTTTGCAATGCCTTAAAgattgtgtgtttaaaatgatataataaaaatattatacaagcATGA

Function

NR:

description
PREDICTED: small integral membrane protein 18

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0071702 organic substance transport biological_process
GO:0071705 nitrogen compound transport biological_process
GO:0042886 amide transport biological_process
GO:0033036 macromolecule localization biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU4359 True 1495 lncRNA 0.44 2 12969093 12973012
XM_043244071.1 False 952 mRNA 0.44 2 12969151 12972490

Neighbor

gene id symbol gene type direction distance location
qdprb.1 qdprb1,qdpr,LOC107750446,LOC107702409,LOC108437732 coding downstream 2586 12963598 ~ 12966507 (-)
ldb2b ldb2b,LOC107562611,LOC107750444,LOC107702407,LOC107548319,LOC107671914,LOC107709436,LOC108434309 coding downstream 12831 12944109 ~ 12956262 (-)
tapt1b tapt1,LOC107750443,LOC107702406,LOC107671913,LOC108434341,LOC105908524 coding downstream 25676 12929116 ~ 12943417 (-)
fgfbp2b LOC107750470,LOC107702288 coding downstream 69430 12897567 ~ 12899663 (-)
fgfbp1b LOC107709462,LOC107548318 coding downstream 74846 12892635 ~ 12894247 (-)
adgrl3.1 adgrl3.1,LOC107709467,LOC107671918,LOC107702411 coding upstream 20232 12993244 ~ 13084503 (-)
rfc1 rfc1,LOC107709439,LOC107700290,LOC107757601 coding upstream 150859 13123871 ~ 13136414 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding upstream 164415 13137427 ~ 13141344 (-)
ugdh ugdh,LOC107757604,LOC107700292 coding upstream 174432 13147444 ~ 13154024 (-)
pds5a pds5a,LOC107757607,LOC107700294 coding upstream 195147 13168159 ~ 13189762 (-)
G3020 NA non-coding downstream 81440 12886776 ~ 12887653 (-)
G2891 NA non-coding downstream 351051 12617768 ~ 12618042 (-)
G2889 NA non-coding downstream 373799 12592441 ~ 12595294 (-)
G2882 NA non-coding downstream 418854 12549922 ~ 12550239 (-)
G2842 NA non-coding downstream 513521 12455354 ~ 12455572 (-)
G3070 NA non-coding upstream 232775 13205787 ~ 13206826 (-)
G3074 NA non-coding upstream 321685 13294697 ~ 13295015 (-)
G3080 NA non-coding upstream 329741 13302753 ~ 13313529 (-)
trnar-ucg_68 NA non-coding upstream 415422 13388434 ~ 13388506 (-)
trnar-ucg_69 NA non-coding upstream 416241 13389253 ~ 13389325 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 42611 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 602985 12337962 ~ 12366108 (-)
ugt8 ugt8,LOC107745064,LOC107656191,LOC107750420,LOC107702381 other downstream 851710 12097910 ~ 12117383 (-)
apela NA other downstream 1180427 11783629 ~ 11788666 (-)
ptprdb ptprdb,LOC107754148,LOC107656000,LOC107746012,LOC107591569,LOC107551589 other downstream 1388376 11514151 ~ 11580717 (-)
smim14 smim14,LOC107757606,LOC107700293 other upstream 181474 13154486 ~ 13159444 (-)
G3072 NA other upstream 318284 13291296 ~ 13291723 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other upstream 856451 13829463 ~ 13842664 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 908881 13881893 ~ 13895284 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 1688462 14661474 ~ 14687860 (-)

Expression


Co-expression Network