rhoh (rhoh,LOC107548321,LOC107598269,LOC107757583)


Basic Information

Item Value
gene id rhoh
gene name rhoh,LOC107548321,LOC107598269,LOC107757583
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13203059 ~ 13205716 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4406
TAATATATGCTCTGGCTGTGAAGGCATGTTTTCTCTCTGTGCTTAAGAGTATTTGAATTTCCTGAGTTTAACAGCTGAACTTCGGAGAAATATGCAGCTTTGGACTGAGCTCTGATCCTCTCTGAAAGCTTAATTAAATGACACAGTATTACAAGTTAAACTGAGCTTTACGTGAACTTGCCAATCTCACAGTTGAAAAGATCAAAGAGGAGTCAAGGAGAGTACAGCGAAAGATACGGCTGAGTGACTTCTCACTTCTGGATTTCTGTCTTCAATATCTCTAATGGTACATAATGAGTTTCTAAACCTTTCACCGGAATACAGAGCCACGTCACAAGACGAAGAGCCTGAAGAAGACCTCAGAATGCTGTTTTACTTGCAGGGGTTTTGCTCTTAGTTCTGCACACCTTGAATTACGACGATGGCCTCATCATCTGTTGGACGCCGctcatatattttttagaagCATTAGACTGtactttataataactacaaCACCAGAGACGGAAGAATGAATGGGTTGGCAGAGACCTCAGTGAAATGCGTACTGGTCGGAGACTGTGCAGTGGGTAAAACTGCGCTTCTTGTACGATTCACTTCTGAAACGTTCCCGGACAGCTACAGACCGACTGTGTACGAGAACACTGGCGTCGACGTTTTCATGGATGGAATCCAGATCAGCTTGGGATTGTGGGATACGGCAGGACATGATACGTTCCGCCAAATCCGGCCCATGTCCTATCAGCAGGCCGACGTGGTTTTGCTGTGTTACTCTGTGGCGAATCCAAATTCGTTAAACAATTTGCGGCAAAAATGGATCGCTGAAGTGAGGGAATTTCTCCCGAAAGTACCTGTGCTGGTCGTCGCCACACAGACGGACCATCGCGAAATGGGCCCTTATCGTGCTAACTGCACCACGGCCTCCGAGGGCAAGCAGGTGGCACAGGAGATCCGTGCCAAGGGATATCTGGAATGCTCTGCTCTCAGCAATCGTGGCGTGCAACAGGTTTT
>XM_043244055.1
GACATGTGTCTTCTGTTTCTTTGCCGCACTGCCTGAATTAGTTGCATGTATGAGTTCTAGACTGCAGAAGAAGCGAGGATCAACACTGTAGATGTGCTTAGAACGTCACAGCGGAAGCTTAGTAGAGATTTGATGTACGATTTTACAGAGAAAAAAGCCCAGCCTCGCATCTCATTTCCCTCTACTAGAGGATGTAATATATGCTCTGGCTGTGAAGGCATGTTTTCTCTCTGTGCTTAAGAGTATTTGAATTTCCTGAGTTTAACAGCTGAACTTCGGAGAAATATGCAGCTTTGGACTGAGCTCTGATCCTCTCTGAAAGCTTAATTAAATGACACAGTATTACAAGTTAAACTGAGCTTTACGTGAACTTGCCAATCTCACAGTTGAAAAGATCAAAGAGGAGTCAAGGAGAGTACAGCGAAAGATACGGCTGAGTGACTTCTCACTTCTGGATTTCTGTCTTCAATATCTCTAATGGTACATAATGAGTTTCTAAACCTTTCACCGGAATACAGAGCCACGTCACAAGACGAAGAGCCTGAAGAAGACCTCAGAATGCTGTTTTACTTGCAGGGGTTTTGCTCTTAGTTCTGCACACCTTGAATTACGACGATGGCCTCATCATCTGTTGGACGCCGctcatatattttttagaagCATTAGACTGtactttataataactacaaCACCAGAGACGGAAGAATGAATGGGTTGGCAGAGACCTCAGTGAAATGCGTACTGGTCGGAGACTGTGCAGTGGGTAAAACTGCGCTTCTTGTACGATTCACTTCTGAAACGTTCCCGGACAGCTACAGACCGACTGTGTACGAGAACACTGGCGTCGACGTTTTCATGGATGGAATCCAGATCAGCTTGGGATTGTGGGATACGGCAGGACATGATACGTTCCGCCAAATCCGGCCCATGTCCTATCAGCAGGCCGACGTGGTTTTGCTGTGTTACTCTGTGGCGAATCCAAATTCGTTAAACAATTTGCGGCAAAAATGGATCGCTGAAGTGAGGGAATTTCTCCCGAAAGTACCTGTGCTGGTCGTCGCCACACAGACGGACCATCGCGAAATGGGCCCTTATCGTGCTAACTGCACCACGGCCTCCGAGGGCAAGCAGGTGGCACAGGAGATCCGTGCCAAGGGATATCTGGAATGCTCTGCTCTCAGCAATCGTGGCGTGCAACAGGTTTTTCGAGTGTGCCGTTCGGACGGCTGTTAA

Function

symbol description
rhoh Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Human ortholog(s) of this gene implicated in epidermodysplasia verruciformis. Orthologous to human RHOH (ras homolog family member H).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoH

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07873 RHOH, TTF; Ras homolog gene family, member H

RNA

RNA id representative length rna type GC content exon number start site end site
TU4406 False 1011 TUCP 0.47 2 13203253 13205688
XM_043244055.1 True 1233 mRNA 0.46 2 13203059 13205716

Neighbor

gene id symbol gene type direction distance location
n4bp2 n4bp2,LOC107700258,LOC107598270 coding upstream 1523 13190665 ~ 13201536 (+)
ube2kb ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303 coding upstream 35460 13161823 ~ 13167599 (+)
lias lias coding upstream 55690 13141579 ~ 13147369 (+)
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding upstream 79324 13085849 ~ 13123735 (+)
gtf2e2 gtf2e2,LOC107671915,LOC107548363,LOC107750445,LOC107702408 coding upstream 225389 12966765 ~ 12977670 (+)
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding downstream 4878 13210594 ~ 13216696 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding downstream 184386 13390102 ~ 13398726 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding downstream 217316 13423032 ~ 13434220 (+)
mab21l2 mab21l2,LOC107700304 coding downstream 451138 13656854 ~ 13659110 (+)
rps3a rps3a,LOC107695588 coding downstream 578099 13783815 ~ 13786613 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding upstream 31126 13170087 ~ 13171933 (+)
G2967 NA non-coding upstream 47262 13023428 ~ 13155797 (+)
G2981 NA non-coding upstream 78464 13123872 ~ 13124595 (+)
G2948 NA non-coding upstream 265589 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 329390 12794867 ~ 12873669 (+)
LOC122348541 NA non-coding downstream 88401 13294117 ~ 13295055 (+)
LOC122334852 NA non-coding downstream 91156 13296872 ~ 13300061 (+)
G3077 NA non-coding downstream 94403 13300119 ~ 13305686 (+)
LOC122350991 NA non-coding downstream 96285 13302001 ~ 13310359 (+)
LOC122351005 NA non-coding downstream 106378 13312094 ~ 13315805 (+)
dnah6 dnah6,LOC106610484 other upstream 478601 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 544552 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1358999 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1419989 11773956 ~ 11783070 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other upstream 1478159 11711940 ~ 11724900 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 310492 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 908715 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1274482 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1396596 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 1404528 14610244 ~ 14612677 (+)

Expression


Co-expression Network