LOC122348541


Basic Information

Item Value
gene id LOC122348541
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13294117 ~ 13295055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4413
CTTACCATCAGTCAGCTGGAAACCAAAGGGCTCTGCAACAAAGTGTGGTTTGGGATCAGCTGGCTCTGGATTCGGCTCCGAGTTCTCTTGTAGAGGCACAAATGGCTCAACTCTGGTCCCGCGGCAGCAGCAGAAGGAGGGCCACTTTAAGGGCTTCCGTGCTTTcttaaagactgaagaaatccctttcttcatccttttcctcaaaccggggtgtttttctaaaaatcattcaaaaagactgaatcatttgcatatgccagtgcactgtgctggtatttactatctacacaaatgtcccaggttttactgtactttcgtTCTTACCTGTG
>XR_006251340.1
catttaaacttcaacatttctgagatgcatttcaCCTTTTGGAGCAGCCAAaaGTCACAGGTCTGCTAGACGAAGGCTACTGATCCTGATGTGGAGGGCTTGAGGTGGCCACTGTCTTCACAATGAACCCAGTAGTTGGAATCAGTTCACACAAATCCAAAGCTTcctgatacatacacacatacatacgGTACAGTAATCGTGGTAGCAGACTTACCATCAGTCAGCTGGAAACCAAAGGGCTCTGCAACAAAGTGTGGTTTGGGATCAGCTGGCTCTGGATTCGGCTCCGAGTTCTCTTGTAGAGGCACAAATGGCTCAACTCTGGTCCCGCGGCAGCAGCAGAAGGAGGGCCACTTTAAGGGCTTCCGTGCTTTcttaaagactgaagaaatccctttcttcatccttttcctcaaaccggggtgtttttctaaaaatcattcaaaaagactgaatcatttgcatatgccagtgcactgtgctggtatttactatctacacaaatgtcccaggttttactgtactttcgtTCTTACCTGTGCTGT

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU4413 False 332 lncRNA 0.51 1 13294720 13295051
XR_006251340.1 True 548 lncRNA 0.45 3 13294117 13295055

Neighbor

gene id symbol gene type direction distance location
chrna9a LOC107660492,LOC107757584,LOC107700259,LOC107548308 coding upstream 77421 13210594 ~ 13216696 (+)
n4bp2 n4bp2,LOC107700258,LOC107598270 coding upstream 92581 13190665 ~ 13201536 (+)
ube2kb ube2kb,LOC100708886,LOC108261162,LOC105026169,LOC107088242,LOC102229303 coding upstream 126518 13161823 ~ 13167599 (+)
lias lias coding upstream 146748 13141579 ~ 13147369 (+)
si:dkey-92j12.5 LOC107757600,LOC107709437,LOC107709438,LOC107548306 coding upstream 170382 13085849 ~ 13123735 (+)
haspin LOC107695683,LOC108416162,LOC107722281,LOC107580791 coding downstream 95047 13390102 ~ 13398726 (+)
ncapg ncapg,LOC107700299,LOC107757563 coding downstream 127977 13423032 ~ 13434220 (+)
mab21l2 mab21l2,LOC107700304 coding downstream 361799 13656854 ~ 13659110 (+)
rps3a rps3a,LOC107695588 coding downstream 488760 13783815 ~ 13786613 (+)
fhip1aa fam160a1,fam160a1a,LOC107745858,LOC107695572,LOC107700307,LOC107757618,LOC107598295 coding downstream 514638 13809693 ~ 13827382 (+)
G2995 pds5a,LOC107700294,LOC107757607 non-coding upstream 122184 13170087 ~ 13171933 (+)
G2967 NA non-coding upstream 138320 13023428 ~ 13155797 (+)
G2981 NA non-coding upstream 169522 13123872 ~ 13124595 (+)
G2948 NA non-coding upstream 356647 12936577 ~ 12937470 (+)
G2918 NA non-coding upstream 420448 12794867 ~ 12873669 (+)
LOC122334852 NA non-coding downstream 1817 13296872 ~ 13300061 (+)
G3077 NA non-coding downstream 5064 13300119 ~ 13305686 (+)
LOC122350991 NA non-coding downstream 6946 13302001 ~ 13310359 (+)
LOC122351005 NA non-coding downstream 17039 13312094 ~ 13315805 (+)
LOC122351401 NA non-coding downstream 64647 13359702 ~ 13362727 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 88401 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 569659 12659262 ~ 12724458 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other upstream 635610 12644679 ~ 12658507 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other upstream 1450057 11837606 ~ 11844060 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other upstream 1511047 11773956 ~ 11783070 (+)
slit2 slit2,LOC107700301,LOC107695646 other downstream 221153 13516208 ~ 13585981 (+)
G3187 gatb,LOC107695556,LOC107695902 other downstream 819376 14114431 ~ 14118433 (+)
LOC122345399 NA other downstream 1185143 14480198 ~ 14481346 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 1307257 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 1315189 14610244 ~ 14612677 (+)

Expression


Co-expression Network