LOC122350629 (gatb,LOC107695556,LOC106602370,LOC107695902)


Basic Information

Item Value
gene id LOC122350629
gene name gatb,LOC107695556,LOC106602370,LOC107695902
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13881893 ~ 13895284 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4627
TTGGCCAGACATGTGTGGCTGCTGCGGGTCGAAGAGATACATGAGAGGGGTCTGACAGAGAGACGCAGAGGGCTGGAGATTAGTCCACGAGATGACACGCACGCCGCGTGAACACAACAAATGCTGGCTTATCTCTGCACCTGATAAGAACACGCTCTTGTGTTTCCCCACATGACATGACCTGCCCGAGTCCCTTCTTCTGCTGTGTCGCATGTACATACATCCTCTCTCTTTATCTCAGGTTCATGCCAGAGCCCAACCTGCCGCCGCTGTTTGTTTATGAGAGCGACGCTTCGGTGCCCGCTGGTGCTGACCCTGCCCAGGTCGTGGTGATCGACAGGATAAGTGCCCGGTTGCCAGAGCTGCCATCTGTGAAAAGGACAAGGCTAGTGGAGACGTATGGCATCCTGCAAGAGCACAGCTTCACGCTGGTGAACGAAGACGGACTTGTGGACTACTTTGAGAGCGTTGTTCAGGCGAGCGAAGCAGAACCGAGGAAGGTGATTGGCTGGGTGATCAAGGACCTGATGGGAAATCTGAACAGTCAGAGTCTGAAAGTCTCTCAAAGTCCCATCTCTCCACGCGCTCTTGCTGGACTGATCAATCTTGTGGAATCTGGTCATATCTCATCTTCAGCAGCCAAGCAAGTTTTCCAGGAGATGTGTAAGACTCCAGAGAAGACAGTGGACCAGATCGTGAAGGAGCAGGATTTGTGGATGATAAATGACAAAGAGGAGCTACTAAAGATCTGTAAGAGGATTGTGG
>XM_043247300.1
ATGCGCGAATCTCCCGCCACCAGCTGCCCCACAGATATCGATACGCGGTTTATGAACGCTGTCATAAGAAGTCGCCGGAAACGTTGCTGTTGCACTACTGGCATTATGGGAGTtgaagttttttatttatcGCCATACGTTATACTCGCGAGTTCCCGGCGGCTCAGTAAAACTACATGTACCATCttctcaaacacaaacacaagcatgGCAACCTCCTCATCGGGGTACAGCAGAATGTTCTTtaagctaagaaaatatgctaataaaacacaaagtttATATCATATTGATAGTTTTAATTTAGTGATACGGACAATATGGACGTCTGGATCCAAAACTCAACTTCAGCACAAAGTCCGTACTAAAAGTCTTCCTCAGATGGTTGGTGTTGTGGGTCTGGAAATCCATGCTCAGATTCAGTCCACATCAAAGCTCTTCTCTGGATCTCACGTTAGATTCTTGGCTCCACCAAACTCACTTGTCTCACATTTTGATGCCTCATTACCAGGAACACTGCCAGTACTGAACAGAAGATGCGTGGAGGCTGCTGTACTGACAGGTCTCGCTCTCAACTGTACCATCAACAGGAAGTCACTGTTCGACAGGAAGCACTACTTTTATGCAGACATGCCCgcAGGCTATCAGATCACCCAGCAGAGGGTTCCAATAGCAGTGAATGGCATGTTGGTCTATAGTCATTTTGAAGATCGCAGAAGACGCCAAGTTGTAACCAAGAGCGTGAAAATCAAACAGATCCAGCTTGAGCAAGACAGTGGAAAGAGTCTTCACGATGATGAACGGAGTCAGATTCTCATAGATCTCAACAGAGCAGGTGTAGGTCTGATGGAGCTGGTGATGGAGCCAGAGATGTGCTGCGGAGAGGAGGCAGCAGCTGCCGTCAGAGAGCTTCAGCTCATCGTGCAAGCTCTGGGCACCTGCCAGGCTAACATGGCCGAGGGGCAGCTTAGAGTTGATGCCAACGTGTCCGTGCATCGACCTGGAGAGCCTTTGGGAGTGAGGACGGAGGTCAAAAATATCAACAGCGTGAGGCACCTAGCTAAAGCCATAGACTAcgaaatccagagacagaTGGAGGTTCTACAGAGCGGTGGGACCGTTCTTAATGAGACCCGAGCATTTGACAGCAAATCTGGGTAAGGAGGCCCAGAACAGGATAAGGAAGGCCTACAAGACTACAGGTTCATGCCAGAGCCCAACCTGCCGCCGCTGTTTGTTTATGAGAGCGACGCTTCGGTGCCCGCTGGTGCTGACCCTGCCCAGGTCGTGGTGATCGACAGGATAAGTGCCCGGTTGCCAGAGCTGCCATCTGTGAAAAGGACAAGGCTAGTGGAGACGTATGGCATCCTGCAAGAGCACAGCTTCACGCTGGTGAACGAAGACGGACTTGTGGACTACTTTGAGAGCGTTGTTCAGGCGAGCGAAGCAGAACCGAGGAAGGTGATTGGCTGGGTGATCAAGGACCTGATGGGAAATCTGAACAGTCAGAGTCTGAAAGTCTCTCAAAGTCCCATCTCTCCACGCGCTCTTGCTGGACTGATCAATCTTGTGGAATCTGGTCATATCTCATCTTCAGCAGCCAAGCAAGTTTTCCAGGAGATGTGTAAGACTCCAGAGAAGACAGTGGACCAGATCGTGAAGGAGCAGGATTTGTGGATGATAAATGACAAAGAGGAGCTACTAAAGATCTGTAAGAGGATTGTGGACAGTCACTCGTTGCAGGTTCAGATTATCAGAGGGGGCAATAAGAAAGTAATTAACAAACTGATGGGTGAAGTTATGAGAGAAACCAAAGGCAAAACTGACCCGGTCCAAGCCAGAGCCATTCTAGAGAAAATGGTCTCTTGAATTACCCAGCATGCCTCTTTACGGCTCAGTGCTGTGTTCTGGAGAAATGGAATTTTCATGTTTGTACACTTGTCTGTACAACTGTTCCAGAAAGTCCTGTTAATATTTACCGGTCTGATAAACAAATGTTCTGTGCGTCAa

Function

symbol description
gatb Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).

NR:

description
PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
TU4627 False 765 TUCP 0.52 4 13882278 13884236
XM_043247300.1 True 2010 mRNA 0.48 14 13881893 13895284

Neighbor

gene id symbol gene type direction distance location
sh3d19 sh3d19,LOC107695906,LOC107745872 coding downstream 73625 13790575 ~ 13808268 (-)
lrba lrba,LOC107695599,LOC107745856,LOC107598261 coding downstream 100155 13588381 ~ 13781738 (-)
lcorl lcorl,LOC107695657,LOC107569620,LOC107724149,LOC107700260,LOC107700300,LOC107695668,LOC107724150 coding downstream 430730 13434217 ~ 13451163 (-)
fam184b fam184b,LOC107742663,LOC107757610,LOC107700297,LOC107695781 coding downstream 459653 13398841 ~ 13422240 (-)
trnar-ucg_67 NA coding downstream 591553 13290268 ~ 13290340 (-)
LOC122350613 dctpp1,LOC107695562 coding upstream 218049 14113333 ~ 14114156 (-)
fbxw7 fbxw7,LOC107745860 coding upstream 374969 14270253 ~ 14401149 (-)
tmem154 NA coding upstream 507125 14402409 ~ 14411570 (-)
trim2a trim2,trim2a,LOC107695527,LOC107745864,LOC108434330 coding upstream 564511 14459795 ~ 14478877 (-)
fhdc1 fhdc1,LOC107745865,LOC107695508,LOC107757620,LOC107700311,LOC107598289 coding upstream 604934 14500218 ~ 14520958 (-)
G3222 NA non-coding downstream 3578 13825494 ~ 13878315 (-)
LOC122345850 NA non-coding downstream 92975 13787431 ~ 13788918 (-)
G3211 NA non-coding downstream 95244 13783854 ~ 13786649 (-)
G3192 NA non-coding downstream 362902 13518038 ~ 13518991 (-)
G3096 NA non-coding downstream 489426 13392005 ~ 13392467 (-)
G3230 NA non-coding upstream 28991 13924275 ~ 13927061 (-)
G3232 NA non-coding upstream 66424 13961708 ~ 13968780 (-)
LOC122351408 NA non-coding upstream 354321 14249605 ~ 14267785 (-)
G3266 NA non-coding upstream 517483 14412767 ~ 14412975 (-)
G3318 NA non-coding upstream 595440 14490724 ~ 14491638 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other downstream 39229 13829463 ~ 13842664 (-)
G3072 NA other downstream 590170 13291296 ~ 13291723 (-)
smim14 smim14,LOC107757606,LOC107700293 other downstream 722449 13154486 ~ 13159444 (-)
smim18 NA other downstream 908881 12969093 ~ 12973012 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 955411 12904199 ~ 12926482 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 766190 14661474 ~ 14687860 (-)
myoz2b myoz2,myoz2b,LOC107695402,LOC107700320 other upstream 791312 14686596 ~ 14714546 (-)
G3491 gpank1 other upstream 851545 14746829 ~ 14748975 (-)
cxxc4 cxxc4,LOC107695705 other upstream 1002917 14898201 ~ 14918786 (-)
G3522 NA other upstream 1029801 14925085 ~ 14925363 (-)

Expression


Co-expression Network