LOC122350606 (gatb,LOC107695556,LOC107695902)


Basic Information

Item Value
gene id LOC122350606
gene name gatb,LOC107695556,LOC107695902
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 13829463 ~ 13842664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4632
aaacacaaacacaagcatgGCAACCTCCTCATCGGGGTACAGCAGAATGTTCTTtaagctaagaaaatatgctaataaaacacaaagtttATATCATATTGATAGTTTTAATTTAGTGATACGGACAATATGGACGTCTGGATCCAAAACTCAACTTCAGCACAAAGTCCGTACTAAAAGTCTTCCTCAGATGGTTGGTGTTGTGGGTCTGGAAATCCATGCTCAGATTCAGTCCACATCAAAGCTCTTCTCTGGATCTCACGTTAGATTCTTGGCTCCACCAAACTCACTTGTCTCACATTTTGATGCCTCATTACCAGGAACACTGCCAGTACTGAACAGAAGATGCGTGGAGGCTGCTGTACTGACAGGTCTCGCTCTCAACTGTACCATCAACAGGAAGTCACTGTTCGACAGGAAGCACTACTTTTATGCAGACATGCCCGTGAGTTTTCTCCCCTGCGCACACATAATGAATTTGTCAGCATTTTATCTTCACATTCCAAGGGATAGAAGTGCTGATGACACAAATGCAATG
>XM_043247248.1
AACTACATGTACCATCttctcaaacacaaacacaagcatgGCAACCTCCTCATCGGGGTACAGCAGAATGTTCTTtaagctaagaaaatatgctaataaaacacaaagtttATATCATATTGATAGTTTTAATTTAGTGATACGGACAATATGGACGTCTGGATCCAAAACTCAACTTCAGCACAAAGTCCGTACTAAAAGTCTTCCTCAGATGGTTGGTGTTGTGGGTCTGGAAATCCATGCTCAGATTCAGTCCACATCAAAGCTCTTCTCTGGATCTCACGTTAGATTCTTGGCTCCACCAAACTCACTTGTCTCACATTTTGATGCCTCATTACCAGGAACACTGCCAGTACTGAACAGAAGATGCGTGGAGGCTGCTGTACTGACAGGTCTCGCTCTCAACTGTACCATCAACAGGAAGTCACTGTTCGACAGGAAGCACTACTTTTATGCAGACATGCCCgcaGGCTATCAGATCACCCAGCAGAGGGTTCCAATAGCAGTGAATGGCATGTTGGTCTATAGTCATTTTGAAGATCGCAGAAGACGCCAAGTTGACAAGAGCGTGAAAATCAAACAGATCCAGCTTGAGCAAGACAGTGGAAAGAGTCTTCACGATGATGAGCGTCAGATTCTCATAGATCTCAACAGAGCAGGTGTAGGTCTGATGGAGCTGGTGATGGAGCCAGAGATGTGCTGCGGAGAGGAGGCAGCAGCTGCCGTCAGAGAGCTTCAGCTCATCGTGCAAGCTCTGGGCACCTGCCAGGCTAACATGGCCGAGGGGCAGCTTAGAGTTGATGCCAACGTGTCCGTGCATCGACCTGGAGAGCCTTTGGGAGTGAGGACGGAGGTCAAAAATATCAACAGCGTGAGGCACCTAGCTAAAGCCATAGACtacgaaatccagagacagaTGGAGGTTCTACAGAGCGGTGGGACCGTTCTTAATGACCGAGCATTTGACAGCAAATCTGGTAACACAGTTCCAATGAGGGATAAGGAAGGCCTACAAGACTACAGGTTCATGCCAGAGCCCAACCTGCCGCCGCTGTTTGTTTATGAGAGCGACGCTTCGGTGCCCGCTGGTGCTGACCCTGCCCAGGTCGTGGTGATCGACAGGATAAGTGCCCGGTTGCCAGAGCTGCCATCTGTGAAAAGGACAAGGCTAGTGGAGACGTATGGCATCCTGCAAGAGCACAGCTTCACGCTGGTGAACGAAGACGGACTTGTGGACTACTTTGAGAGCGTTGTTCAGGCGAGCGAAGCAGAACCGAGGAAGGTGATTGGCTGGGTGATCAAGGACCTGATGGGAAATCTGAACAGTCAGAGTCTGAAAGTCTCTCAAAGTCCCATCTCTCCACGCGCTCTTGCTGGACTGATCAATCTTGTGGAATCTGGTCATATCTCATCTTCAGCAGCCAAGCAAGTTTTCCAGGAGATGTGTAAGACTCCAGAGAAGACAGTGGACCAGATCGTGAAGGAGCAGGATTTGTGGATGATAAATGACAAAGAGGAGCTACTAAAGATCTGTAAGAGGATTGTGGAGAGTCACCCTGGGGAGGTTCAGATTATCAGAGGGGGCAATAAGAAAGTAATTAACAAACTGATGGGTGAAGTTATGAGAGAAACCAAAGGCAAAACTGACCCGGTCCAAGCCAGAGCCATTCTAGAGAAAATGGTCTCTTGAATTACCCAGCATGCCTCTTTACGGCTCAGTGCTGTGTTCTGGAGAAATGGAATTTTCATGTTTGTACACTTGTCTGTACAACTGTTCCAGAAAGTCCTGTTAATATTTACCGGTCTGATAAACAAATGTTCTGTGCGTCAa

Function

symbol description
gatb Predicted to enable glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity. Predicted to be involved in glutaminyl-tRNAGln biosynthesis via transamidation and mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be part of glutamyl-tRNA(Gln) amidotransferase complex. Predicted to be active in mitochondrion. Is expressed in serotonergic neurons. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 41. Orthologous to human GATB (glutamyl-tRNA amidotransferase subunit B).

NR:

description
PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
TU4632 False 538 TUCP 0.43 3 13841542 13842643
XM_043247248.1 True 1831 mRNA 0.48 16 13829463 13842664

Neighbor

gene id symbol gene type direction distance location
sh3d19 sh3d19,LOC107695906,LOC107745872 coding downstream 21195 13790575 ~ 13808268 (-)
lrba lrba,LOC107695599,LOC107745856,LOC107598261 coding downstream 47725 13588381 ~ 13781738 (-)
lcorl lcorl,LOC107695657,LOC107569620,LOC107724149,LOC107700260,LOC107700300,LOC107695668,LOC107724150 coding downstream 378300 13434217 ~ 13451163 (-)
fam184b fam184b,LOC107742663,LOC107757610,LOC107700297,LOC107695781 coding downstream 407223 13398841 ~ 13422240 (-)
trnar-ucg_67 NA coding downstream 539123 13290268 ~ 13290340 (-)
LOC122350613 dctpp1,LOC107695562 coding upstream 270669 14113333 ~ 14114156 (-)
fbxw7 fbxw7,LOC107745860 coding upstream 427589 14270253 ~ 14401149 (-)
tmem154 NA coding upstream 559745 14402409 ~ 14411570 (-)
trim2a trim2,trim2a,LOC107695527,LOC107745864,LOC108434330 coding upstream 617131 14459795 ~ 14478877 (-)
fhdc1 fhdc1,LOC107745865,LOC107695508,LOC107757620,LOC107700311,LOC107598289 coding upstream 657554 14500218 ~ 14520958 (-)
LOC122345850 NA non-coding downstream 40545 13787431 ~ 13788918 (-)
G3211 NA non-coding downstream 42814 13783854 ~ 13786649 (-)
G3192 NA non-coding downstream 310472 13518038 ~ 13518991 (-)
G3096 NA non-coding downstream 436996 13392005 ~ 13392467 (-)
G3095 NA non-coding downstream 437578 13391555 ~ 13391885 (-)
G3230 NA non-coding upstream 81611 13924275 ~ 13927061 (-)
G3232 NA non-coding upstream 119044 13961708 ~ 13968780 (-)
LOC122351408 NA non-coding upstream 406941 14249605 ~ 14267785 (-)
G3266 NA non-coding upstream 570103 14412767 ~ 14412975 (-)
G3318 NA non-coding upstream 648060 14490724 ~ 14491638 (-)
G3072 NA other downstream 537740 13291296 ~ 13291723 (-)
smim14 smim14,LOC107757606,LOC107700293 other downstream 670019 13154486 ~ 13159444 (-)
smim18 NA other downstream 856451 12969093 ~ 12973012 (-)
prom1b LOC107709459,LOC107671910,LOC107548362 other downstream 902981 12904199 ~ 12926482 (-)
gria2a gria2a,LOC107548351,LOC107702389,LOC107745055,LOC107750427,LOC108443988,LOC107655932,LOC107591557 other downstream 1463355 12337962 ~ 12366108 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other upstream 39229 13881893 ~ 13895284 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other upstream 818810 14661474 ~ 14687860 (-)
myoz2b myoz2,myoz2b,LOC107695402,LOC107700320 other upstream 843932 14686596 ~ 14714546 (-)
G3491 gpank1 other upstream 904165 14746829 ~ 14748975 (-)
cxxc4 cxxc4,LOC107695705 other upstream 1055537 14898201 ~ 14918786 (-)

Expression


Co-expression Network