G3322 (arfip1,LOC107695488,LOC107745866,LOC107700312)


Basic Information

Item Value
gene id G3322
gene name arfip1,LOC107695488,LOC107745866,LOC107700312
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14526617 ~ 14528471 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4753
TGTAGCTCAGGCGTCTTGAGACTAAGGTCAGCAAACGCGTCTCCCAGCTGTCTCTGCGTCTGCAGCATCTGCGCTAGCTGAGCGCAAAGTGTCTGCGCCAGCTTGATAACATGCTCATACTTTCGTTTGTTGTCACGGAGAACCTCGATCTGCGCCTCCAGCTCCAGATCAACTGTACGGGATCCACGGCCTAACTTCTCTGACAGAATCTGCTTAGTGCACTGTGGAGGGGAGTATTTGTAAGTGTTGATGCTCCACTTCCTCATCAGCTCCAGTTTCTCTATGGCAGGACTCTTTATATCATCAGCAAGGACCACCGCTCCTCCCATCTGCTGCTCTCTCAAAGCACCTGGTGACAGGATGACAGCTGTTAACTGACGCAATATTGAGACTCATTTTATATGATACAATTATCCTAATTGCCTAAATCAATAGAGGAACTTCCAATATTAACATCAGATAATTACGTCTGACAAATCACATCCGTTTCTACTTATTAAAGAAGTTTTGTAGTCATTAACGAAAACCATcgagaaacatttttgttaactgaaaaaaaatataagaagaAACCTAAACTGTTAGGCACGTAGCTTTAAAGTAATTGGAAGACGTTCTAAATTGACATACTATCAGTACAATAGAGAAAAATATTGAGACCAACAAAACTGATCAAATTTAAGCTAATTCgatagataaaaataaacgaatatgctaaaataatactaaaacgtGTACAGGAGTAACTCTAGACTAAATGGAagcttttctcatttaaaacatcAGGCGGCGGCAGAAACAGTGGGAAACAACATAAGCAGTGTGTTGTTTTGCATGATTGCAATCCTGTGAGGGAAAAAGTGGAAGTTATTGATAAATCTAAATCTTTGTCTTTTGCGATCAGTCAGGAAGGCAAAAGGTTACAGGGTGGTCAGCCAAGATGAATTAAATAAGCCCCAACTCTAAAGACATTAAAGAGAGAAGCAACAAGGAGGAAGAAAACAGGCCTGGAGGTGGTGAAATTTCACAGAACACCATCATAAAGTTACAACCTACCAATCTAATGCACTACAACTACCCAAAAGTGGAAAGTGATGTCCATCTGTTGAAGATTTTAAGAGACATCACTGGAATCTACTAGAAAAAAAACGTGTCTTTATGATGGTTCAGCCTGAAACCGACAGTGCAGCGTTAGTAAGGAAGAGATGAAGGAGTGCAGGTCCATGCGGGACGTCATCTGTTACGGTATGTGGTACCTCTCTGTGTCTCCACCTGACTATCACTGATGCTGCGAGCTAGCCGGCTGGCTGCTGCAGGACTGGGGGCAACTTTAGGTGTGGTGGCTTGAGATGGCGACCCTAAAAACGGTCAGTGAtgaattttgatgttttatacaACGGACCTGGTATTATTTCTGTAAACTACTGCCACAGAGGaagcatccatccatcaaaataaatacaaaatacacacaaaaaaaatcaattggtTGCTTGACACATGAAGTATGAAaagcatttaatgcaaaaacaattcAATCAGACTGTGgttacactaccattcaaaagtttg

Function

symbol description
arfip1 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

NR:

description
PREDICTED: arfaptin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4753 True 1572 lncRNA 0.40 2 14526617 14528471

Neighbor

gene id symbol gene type direction distance location
LOC122346953 pcdh8 coding upstream 28303 14490784 ~ 14498314 (+)
tmem131l LOC107695518,LOC107745862,LOC107757619,LOC107700308 coding upstream 67599 14425254 ~ 14459018 (+)
mnd1 mnd1,LOC107700309 coding upstream 102472 14413027 ~ 14424145 (+)
LOC122350619 dctpp1,LOC107695562 coding upstream 683226 13842778 ~ 13843391 (+)
fhip1aa fam160a1,fam160a1a,LOC107745858,LOC107695572,LOC107700307,LOC107757618,LOC107598295 coding upstream 699235 13809693 ~ 13827382 (+)
plrg1 plrg1,LOC107757621,LOC107695461,LOC107700313 coding downstream 55179 14583650 ~ 14588764 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding downstream 76981 14605452 ~ 14607397 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding downstream 106749 14635220 ~ 14643239 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding downstream 115542 14644013 ~ 14659537 (+)
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding downstream 133187 14661658 ~ 14663101 (+)
G3282 NA non-coding upstream 44811 14481430 ~ 14481806 (+)
G3262 NA non-coding upstream 120614 14402406 ~ 14406003 (+)
G3245 fbxw7,LOC107757568,LOC107745860 non-coding upstream 252832 14268912 ~ 14273785 (+)
G3165 gatb,LOC107695556 non-coding upstream 644222 13828059 ~ 13882395 (+)
LOC122345860 sh3d19,LOC107745872,LOC107695906,LOC107598296,LOC107700261 non-coding upstream 733777 13787434 ~ 13792840 (+)
G3324 NA non-coding downstream 2545 14531016 ~ 14532206 (+)
G3326 fgg,LOC107745866,LOC107695488,LOC107714655,LOC107695473,LOC107700315,LOC107757622,LOC107572199 non-coding downstream 4544 14533015 ~ 14596547 (+)
G3361 NA non-coding downstream 86462 14614933 ~ 14615917 (+)
LOC122353352 NA non-coding downstream 92188 14620659 ~ 14624093 (+)
G3370 NA non-coding downstream 143843 14672314 ~ 14678944 (+)
LOC122345399 NA other upstream 45271 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 408184 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 940636 13516208 ~ 13585981 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 1320901 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 1802159 12659262 ~ 12724458 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other downstream 73841 14602312 ~ 14603888 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 81773 14610244 ~ 14612677 (+)
G3380 LOC107572695,LOC107695836 other downstream 195074 14723545 ~ 14791788 (+)
hemgn hemgn,trmo other downstream 502473 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 650132 15178603 ~ 15317624 (+)

Expression


Co-expression Network