Fish Transcriptome and Expression Database

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ornamental fish

G21

Basic Information

Item	Value
gene id	G21
gene name	NA
gene type	non-coding
species	tiger barb (Puntius tetrazona)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NC_056699.1
NCBI id	CM032068.1
chromosome length	31761587
location	206113 ~ 206350 (+)
genome version	ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU48
ttttaggccCAATTGAGtgtcataacaaaaaaaacaacaaaaaaagttgggAATTATTTAACATAACATTAAATGTGGCACAATTTTTCCTCATATTACAATTCTGTCTGTGATCTTCAGCATCATTGCGTTTATAAAACAAGTACTAATACTACAGCAATACATATTATGCATACAGCAGtcaaaacattcttttttgGCTCCAGAAAGATACCGTTTGGATTCCACTTTGATCACA

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU48	True	238	lncRNA	0.55	1	206113	206350

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC122337612	cd38,LOC107568972,LOC107693813	coding	downstream	361505	567855 ~ 592341 (+)
LOC122342042	LOC107746594,LOC107582328,LOC107686751	coding	downstream	522721	729071 ~ 738922 (+)
LOC122341978	NA	coding	downstream	836833	1043183 ~ 1047811 (+)
ggact.3	NA	coding	downstream	836835	1043185 ~ 1045789 (+)
LOC122347479	LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791	coding	downstream	1038813	1245163 ~ 1250334 (+)
G12	NA	non-coding	upstream	17965	187799 ~ 188148 (+)
G8	NA	non-coding	upstream	49767	155927 ~ 156346 (+)
LOC122351887	NA	non-coding	upstream	133372	71631 ~ 72741 (+)
G55	NA	non-coding	downstream	187289	393639 ~ 393899 (+)
G69	NA	non-coding	downstream	235549	441899 ~ 442197 (+)
LOC122348617	NA	non-coding	downstream	259570	465920 ~ 466854 (+)
LOC122348571	NA	non-coding	downstream	267689	474039 ~ 475160 (+)
G84	NA	non-coding	downstream	409814	616164 ~ 622738 (+)
G10	NA	other	upstream	27913	177716 ~ 178200 (+)
LOC122341994	NA	other	downstream	239590	445940 ~ 449640 (+)
G136	kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674	other	downstream	913369	1119719 ~ 1120721 (+)
LOC122327253	NA	other	downstream	1232690	1439040 ~ 1441666 (+)
cyyr1	cyyr1,LOC107751099,LOC107698919,LOC107593871	other	downstream	1979471	2185821 ~ 2192464 (+)
grtp1a	grtp1,grtp1a,LOC107571994	other	downstream	2277290	2483640 ~ 2489103 (+)

Expression

Co-expression Network