lrata (lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590)


Basic Information

Item Value
gene id lrata
gene name lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14602312 ~ 14603888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4804
CGTAGACTCGGTCGAAGATTTCGCGTATGGAGCTCAGATTACGGTCAACGATATGGATGTGAAAATGAAGTGTCAAGCGCTTGTGAGCGAGGAAGTCGCGAGGAGAGCGGAGAAGCTGGTCGGCGACATCCCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTATTGCAGGTACGGGACACCTGTGAGCCAGCAGACGGACAAGTTCTGTGACTGTCTGAAAACCATCATTCGGGACCAGAGAAGTGTGGCATTAACCGTCGGAATAGGAGTGATGTACATCCTGTGTTTTGGCCTGGCACCATCAACTACATTACCCACAATCCTTATTCCCTTCGTTATGTGGATGGCTGGCTGAGAGGCTCTTTCGCGTGACACTTTTCACATTAAACAACAAAGCTCAGTTTTAAAGGGGACAAGTACACAACAACGCAATGCATCAGTGCAGCAGTGGAATATGTGTAAACGTGCAAAGCACACAATGTTTAAGCatcatttgcttttttcttctAGCTATACGTCAAAAGATAAGCTGTATCATTTACATAGTTCATGGCAACATGCTGTTAACTCTTAAACAGTATTCTTAAACAGTATACCTAGAATTGGTAAAGCCAATATTGTTGTAGCTTAAAGTTACAGATTGCATGTACTGTTCACTAAAGGTGCCttatatttgtttatgattATTGATATAGAATCTCACTGGTAAAATCAGTCCCATTGAGGTACGGACAGTGATTTAAGACATAACATATATAAGCAGGCCTACCTGTAGcttttgtattgttattatcaaGCTCTGACGATGCTTTATTGTTAATttgtacagtttaaaatgtatatttaataccATATGTTTCAGAATGAGAACCAGAACAAGAAAACGCAGACCGAACAGTTTGATGAATGTTGGCATTAtgtatgaataaaatgattgcTTCTGGTTACTGCTGC
>XM_043225353.1
CGCGCCGTATATAAATCCTCCTCGGGCTGTGAAGTCTGCGAAGCCTACAAGTCATAAAAATGCTAGACTCGCTGACGCTACTATTTGAGAAGCTCTTCCTTTTCTCGAACTTTCACATTTTCACAAGTCTCTGGCAGGAGGAGCCGGAGCGCGCGGTGAAATGGCCAGCGCTGAGGAGAGGAGATCTTCTGGAGGTGCAGCGCACTCTCTTCGTTCATTACGGCATCTACCTGGGCGACAACAGGGTGGCGCACCTGATGCCTGACATCATGCCGGTGTTGACCAACAACAAACAGCTCGTCAAGCCGGTCGTCACTAACAAAAGACTCATACTGGGCTGTATTTACAGAAACGCGAGCATACGCGTAGACTCGGTCGAAGATTTCGCGTATGGAGCTCAGATTACGGTCAACGATATGGATGTGAAAATGAAGTGTCAAGCGCTTGTGAGCGAGGAAGTCGCGAGGAGAGCGGAGAAGCTGGTCGGCGACATCCCGTACAGTTTATTGTGGAATAACTGCGAACATTTCGTGACGTATTGCAGGTACGGGACACCTGTGAGCCAGCAGACGGACAAGTTCTGTGACTGTCTGAAAACCATCATTCGGGACCAGAGAAGTGTGGCATTAACCGTCGGAATAGGAGTGATGTACATCCTGTGTTTTGGCCTGGCACCATCAACTACATTACCCACAATCCTTATTCCCTTCGTTATGTGGATGGCTGGCTGAGAGGCTCTTTCGCGTGACACTTTTCACATTAAACAACAAAGCTCAGTTTTAAAGGGGACAAGTACACAACAACGCAATGCATCAGTGCAGCAGTGGAATATGTGTAAACGTGCAAAGCACACAATGTTTAAGCatcatttgcttttttcttctAGCTATACGTCAAAAGATAAGCTGTATCATTTACATAGTTCATGGCAACATGCTGTTAACTCTTAAACAGTATTCTTAAACAGTATACCTAGAATTGGTAAAGCCAATATTGTTGTAGCTTAAAGTTACAGATTGCATGTACTGTTCACTAAAGGTGCCttatatttgtttatgattATTGATATAGAATCTCACTGGTAAAATCAGTCCCATTGAGGTACGGACAGTGATTTAAGACATAACATATATAAGCAGGCCTACCTGTAGcttttgtattgttattatcaaGCTCTGACGATGCTTTATTGTTAATttgtacagtttaaaatgtatatttaataccATATGTTTCAGAATGAGAACCAGAACAAGAAAACGCAGACCGAACAGTTTGATGAATGTTGGCATTAtgtatgaataaaatgattgcTTCTGGTTACTGCTGCTCGGATTTCTTACACTATTTTCATTCGAATAAAACTTGT

Function

symbol description
lrata Predicted to enable phosphatidylcholine-retinol O-acyltransferase activity. Predicted to act upstream of or within retinol metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in head; liver; pleuroperitoneal region; and visual system. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 14 and retinitis pigmentosa. Orthologous to human LRAT (lecithin retinol acyltransferase).
lrat Enables phosphatidylcholine-retinol O-acyltransferase activity. Involved in retinol metabolic process. Predicted to be located in multivesicular body; perinuclear region of cytoplasm; and rough endoplasmic reticulum. Implicated in Leber congenital amaurosis 14 and retinitis pigmentosa.

NR:

description
PREDICTED: lecithin retinol acyltransferase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K00678 LRAT; phosphatidylcholine-retinol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU4804 False 966 TUCP 0.47 2 14602676 14603849
XM_043225353.1 True 1369 mRNA 0.43 2 14602312 14603888

Neighbor

gene id symbol gene type direction distance location
plrg1 plrg1,LOC107757621,LOC107695461,LOC107700313 coding upstream 13548 14583650 ~ 14588764 (+)
LOC122346953 pcdh8 coding upstream 103998 14490784 ~ 14498314 (+)
tmem131l LOC107695518,LOC107745862,LOC107757619,LOC107700308 coding upstream 143294 14425254 ~ 14459018 (+)
mnd1 mnd1,LOC107700309 coding upstream 178167 14413027 ~ 14424145 (+)
LOC122350619 dctpp1,LOC107695562 coding upstream 758921 13842778 ~ 13843391 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding downstream 1564 14605452 ~ 14607397 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding downstream 31332 14635220 ~ 14643239 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding downstream 40125 14644013 ~ 14659537 (+)
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding downstream 57770 14661658 ~ 14663101 (+)
mxd4 mxd4,LOC107695376,LOC107714650,LOC107757594,LOC107700283 coding downstream 228815 14832703 ~ 14843409 (+)
G3326 fgg,LOC107745866,LOC107695488,LOC107714655,LOC107695473,LOC107700315,LOC107757622,LOC107572199 non-coding upstream 5765 14533015 ~ 14596547 (+)
G3324 NA non-coding upstream 70106 14531016 ~ 14532206 (+)
G3322 arfip1,LOC107695488,LOC107745866,LOC107700312 non-coding upstream 73841 14526617 ~ 14528471 (+)
G3282 NA non-coding upstream 120506 14481430 ~ 14481806 (+)
G3262 NA non-coding upstream 196309 14402406 ~ 14406003 (+)
G3361 NA non-coding downstream 11045 14614933 ~ 14615917 (+)
LOC122353352 NA non-coding downstream 16771 14620659 ~ 14624093 (+)
G3370 NA non-coding downstream 68426 14672314 ~ 14678944 (+)
G3374 NA non-coding downstream 77571 14681459 ~ 14774677 (+)
G3384 NA non-coding downstream 112112 14716000 ~ 14782839 (+)
LOC122345399 NA other upstream 120966 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 483879 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 1016331 13516208 ~ 13585981 (+)
rhoh rhoh,LOC107548321,LOC107598269,LOC107757583 other upstream 1396596 13203059 ~ 13205716 (+)
dnah6 dnah6,LOC106610484 other upstream 1877854 12659262 ~ 12724458 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other downstream 6356 14610244 ~ 14612677 (+)
G3380 LOC107572695,LOC107695836 other downstream 119657 14723545 ~ 14791788 (+)
hemgn hemgn,trmo other downstream 427056 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 574715 15178603 ~ 15317624 (+)
G3599 NA other downstream 874210 15478098 ~ 15498680 (+)

Expression


Co-expression Network