G3391 (gpank1,LOC107700266)


Basic Information

Item Value
gene id G3391
gene name gpank1,LOC107700266
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14745709 ~ 14809721 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU4877
GTAGATTATTCGGCAATCGCTGTGAATGTATTCCACCCTGTTAGGTGCATATTTTAATAACGTAAATGTTAAACAATAATAAGACAGTATATGTCCCTTATGCCATAATGGTATTTTTTATTCTTGcaacaaaaattattaataaataaaaatttattaaaacatgtacTCTTGTGTGCACATCTTTGCCAACAGGATggtaaataatataacaaagttgctctaaaaacatatatatgctGTTAATGCTCCTCacatcacaaaaataagacaaaagtATGGCCaacatttaatgttgttttcaaatattttcttgaATTCTAACAGGGTGGAAGAGAGCTTAACAGAGTGAAACGGCCTAACAGGGTGGAAGACCAGTGTTAACAGGTTCTAACAGCAAATGAGCTTTCAGTCATTGCATTATTTCCCATCTGCAATGCACCTGTATAATATTGTTTCAAaacataatattgtttattaataactaaaatCCAGATTTCCTTTTAGAGGAGGTACATTAATTTAGTTAAgttaatttaacttattttagaCTGTGCTTATGATACCCaacaaaagattaaatatttgttttttgttttttttttctacatatcGCCGCTCAGAAGTTTTAGATCAGCACGATTTTTAAAGTTACAGCAAATAcatcaaaaacagtaatactgtgaaatatttttgcaatttaaaatagcttactttaattatttctgttggtaaatctgaattttcagcatcgatTTTCTAGTTCATTAACTACAATACAATTGTACTTATATTACCACTCAAAATATTTATGGAGGTAGATTCATTGGCagcatacaataaatacaattatatcaGAATTTTAACCCTGTTAGTTTCACATTCCTCCCTGTTAGGTTTATAGATGTCACAAAAAACCCATGTTGAATTTGTGCCCCTCCACCCTTTAAAACACAATCAGTTTAACCCTTTGACACTGGTTTAGAGAAAGACAAGAGAATTTTGAACAAAGGCACAGTAGGTCAGAAGTCAAAGTTAAATGATGCCCGGTAGTCTCTTTCCCATTTCTTGTCTCGTTCTTCTTTCCTCTTAAGTTCTTTAGCACAGAGGGTTGTGCCTTTCTCCTGTCTCTTCTCCAGTCTTTTCTGTTTACGTACGTGTTGCACTGCCTGAGGATCTTTGGCCTGGAAGTGTGTGACTTTCGACTGTGGGCTAGCTCCATACCCCAGGCCGGCCTGGTCTCTCTTTAGTACAGTGCTTACTGGGTTTTTGCGTCCGGAGTGGGCGGGTCCGAGACCAGAAGCGGGGTCCCACCCCAAACGGAGCATCATTTTGTAGCTGTTGCTGGAAGAGGGCAGGCAGTATTGAGGGGTGGTTGGGGGGCGGAGCTCGCTGAACTGATGCAGTGTGGACCTGTTGTGTGTTTCAGTGCTGTCTGTGTAATGCACAGCACACAAATTACACCACT

Function

symbol description
gpank1 Predicted to enable nucleic acid binding activity. Orthologous to human GPANK1 (G-patch domain and ankyrin repeats 1).

NR:

description
PREDICTED: G patch domain and ankyrin repeat-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4877 True 1468 lncRNA 0.39 2 14745709 14809721

Neighbor

gene id symbol gene type direction distance location
fabp2 fabp2,LOC107714631,LOC107572697,LOC107598258,LOC107700317,LOC107695844,LOC107757591 coding upstream 82608 14661658 ~ 14663101 (+)
gucy1b1 gucy1b3,LOC107714654,LOC107757623 coding upstream 86172 14644013 ~ 14659537 (+)
gucy1a1 gucy1a3,LOC107695445,LOC107572203,LOC107700279,LOC107598251 coding upstream 102470 14635220 ~ 14643239 (+)
si:dkey-30k22.5 LOC107695853,LOC107572196 coding upstream 138312 14605452 ~ 14607397 (+)
plrg1 plrg1,LOC107757621,LOC107695461,LOC107700313 coding upstream 156945 14583650 ~ 14588764 (+)
mxd4 mxd4,LOC107695376,LOC107714650,LOC107757594,LOC107700283 coding downstream 22982 14832703 ~ 14843409 (+)
ndufb6 ndufb6 coding downstream 38292 14848013 ~ 14849671 (+)
toporsa topors,LOC107695355,LOC107700322 coding downstream 40439 14850160 ~ 14853910 (+)
LOC122348129 mtap,LOC107595051,LOC107714626,LOC107700323,LOC107598256,LOC107757575,LOC102313215 coding downstream 44489 14854210 ~ 14861916 (+)
tet2 LOC107714646,LOC107695330,LOC107595052,LOC107598249,LOC107700324,LOC107757629 coding downstream 129016 14938737 ~ 14959108 (+)
G3370 NA non-coding upstream 66765 14672314 ~ 14678944 (+)
LOC122353352 NA non-coding upstream 121616 14620659 ~ 14624093 (+)
G3361 NA non-coding upstream 129792 14614933 ~ 14615917 (+)
G3326 fgg,LOC107745866,LOC107695488,LOC107714655,LOC107695473,LOC107700315,LOC107757622,LOC107572199 non-coding upstream 149162 14533015 ~ 14596547 (+)
G3324 NA non-coding upstream 213503 14531016 ~ 14532206 (+)
G3381 LOC107714625,LOC107695349,LOC107595098 non-coding downstream 52891 14862612 ~ 14869892 (+)
G3432 NA non-coding downstream 215989 15025710 ~ 15029067 (+)
G3443 NA non-coding downstream 227558 15037279 ~ 15037670 (+)
G3431 NA non-coding downstream 253530 15063251 ~ 15114948 (+)
LOC122350773 NA non-coding downstream 635467 15445188 ~ 15446124 (+)
npy2r npy2r,LOC107572195,LOC107714623,LOC107695741,LOC107757570,LOC107700264 other upstream 133032 14610244 ~ 14612677 (+)
lrata lrat,lrata,LOC107572197,LOC107714634,LOC107695864,LOC107700276,LOC107757590 other upstream 141821 14602312 ~ 14603888 (+)
LOC122345399 NA other upstream 264363 14480198 ~ 14481346 (+)
G3187 gatb,LOC107695556,LOC107695902 other upstream 627276 14114431 ~ 14118433 (+)
slit2 slit2,LOC107700301,LOC107695646 other upstream 1159728 13516208 ~ 13585981 (+)
hemgn hemgn,trmo other downstream 221223 15030944 ~ 15034800 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other downstream 368882 15178603 ~ 15317624 (+)
G3599 NA other downstream 668377 15478098 ~ 15498680 (+)
G3647 NA other downstream 843372 15653093 ~ 15653381 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other downstream 1254550 16064271 ~ 16069915 (+)

Expression


Co-expression Network