G3495 (pdcd4a,LOC107598278,LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648)


Basic Information

Item Value
gene id G3495
gene name pdcd4a,LOC107598278,LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 14758120 ~ 14759025 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5041
CTCAGATGCTTGGACAATTTATTGCACGAGCAATTGCTGACCACGCTTTACCTATGAGTTTTCTTGACTGTTACAAAGGCAAAGTAGATTGTGACCATGCCAGAGCTGCCCTGGACAGAGCAGCAGTTCTTCTCTCCATGAAAAGGGAAATTATGCGGCTTGATAATGTGTGGGGTGTTGGTGGCGGACAGAGGCCTGTCAGACATCTCATCAAAGAGGTAAGATTGTATTATTAGCAAGTTATTTATTAAGtgtaaactattcattttttt

Function

symbol description
pdcd4a Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including head; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human PDCD4 (programmed cell death 4).

NR:

description
PREDICTED: programmed cell death protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5041 True 272 lncRNA 0.45 2 14758120 14759025

Neighbor

gene id symbol gene type direction distance location
LOC122342957 NA coding downstream 14444 14742645 ~ 14743676 (-)
LOC122342943 usp53b,LOC107714652,LOC107572698,LOC107695415,LOC107757572,LOC108442608,LOC107700316 coding downstream 51477 14704493 ~ 14706643 (-)
map9 LOC107714632,LOC107695730 coding downstream 134891 14615314 ~ 14623229 (-)
fgg fgg,LOC107572199,LOC107714655,LOC107695473,LOC107700315,LOC107757622 coding downstream 161634 14592215 ~ 14596486 (-)
dchs2 dchs2 coding downstream 175899 14554871 ~ 14582221 (-)
LOC122347500 myoz2,myoz2b,LOC107695402,LOC107700320 coding upstream 20176 14779201 ~ 14784805 (-)
synpo2b LOC107572695,LOC107695836 coding upstream 27374 14786399 ~ 14793366 (-)
kcnip4b si:ch211-145b13.5,LOC107757593,LOC107695828,LOC107700280,LOC107714629 coding upstream 37020 14796045 ~ 14803854 (-)
si:ch211-145b13.6 NA coding upstream 45629 14804654 ~ 14806247 (-)
gpank1 gpank1,LOC107682883 coding upstream 48877 14807902 ~ 14812747 (-)
G3493 NA non-coding downstream 7946 14749387 ~ 14750174 (-)
LOC122353106 NA non-coding downstream 15484 14742108 ~ 14742636 (-)
LOC122351313 NA non-coding downstream 21706 14734378 ~ 14736414 (-)
G3475 gucy1a3,LOC107700279,LOC107695445,LOC107572203,LOC107598251 non-coding downstream 121533 14635694 ~ 14636587 (-)
G3357 NA non-coding downstream 147334 14610497 ~ 14610786 (-)
LOC122336242 NA non-coding upstream 12442 14771467 ~ 14772730 (-)
LOC122336348 usp53b,LOC107714652,LOC107572698,LOC107695415,LOC107598280,LOC107700316,LOC108442608 non-coding upstream 13715 14772740 ~ 14773920 (-)
G3502 NA non-coding upstream 89000 14848025 ~ 14848576 (-)
G3546 NA non-coding upstream 242260 15001285 ~ 15004288 (-)
G3570 NA non-coding upstream 470311 15229336 ~ 15229753 (-)
G3491 gpank1 other downstream 9145 14746829 ~ 14748975 (-)
myoz2b myoz2,myoz2b,LOC107695402,LOC107700320 other downstream 43574 14686596 ~ 14714546 (-)
usp53b fabp2,usp53b,LOC107580697,LOC107572698,LOC107714652,LOC107695415,LOC107700316,LOC107598280 other downstream 70260 14661474 ~ 14687860 (-)
LOC122350629 gatb,LOC107695556,LOC106602370,LOC107695902 other downstream 862836 13881893 ~ 13895284 (-)
LOC122350606 gatb,LOC107695556,LOC107695902 other downstream 915456 13829463 ~ 13842664 (-)
cxxc4 cxxc4,LOC107695705 other upstream 139176 14898201 ~ 14918786 (-)
G3522 NA other upstream 166060 14925085 ~ 14925363 (-)
G3515 coro2a other upstream 261617 15020642 ~ 15029620 (-)
G3571 NA other upstream 471514 15230539 ~ 15230886 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 1310152 16069177 ~ 16073920 (-)

Expression


Co-expression Network