G3572 (bnc2,LOC107595060,LOC102789865)


Basic Information

Item Value
gene id G3572
gene name bnc2,LOC107595060,LOC102789865
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15274884 ~ 15275311 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5143
tacagAGATAAAATACATTGTTCTGTGTTATTTTACGCATAGCTTTGTTTAGGTATgcctattttattatatattacatgtaaaaattcTAAGtctatattaattatgttatcTTCCTAATTTTGagtttcgtttgtttgtttgctttgcgtgtttgttttgttttgcttgttctttttagtttttaatttaccTGTAATATGTAGCCTCTAACATAGTCTCTCAGGGTCCAGCCCAGGCCATGGAGGATGTGCAGAACTTCTTCCTGTTTGAGAACACTGAACAGACGGTCCAGCAGGATCTTCAACCTCACAGGTACTGCCTGAGTCCCATACAGCATCAGACTGCTAATGTCAAACACCACATTGGACTGTACAATCTCCACCTGTGTCGGGTGGTAGAGATGCTGTGTGCTCAGCTTGTCTAGA

Function

symbol description
bnc2 Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within developmental pigmentation and pronephric nephron tubule development. Located in nucleus. Is expressed in several structures, including centrum; gut; hypodermal cell; nervous system; and pleuroperitoneal region. Used to study urinary tract obstruction. Orthologous to human BNC2 (basonuclin 2).

NR:

description
PREDICTED: zinc finger protein basonuclin-2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5143 True 428 lncRNA 0.39 1 15274884 15275311

Neighbor

gene id symbol gene type direction distance location
cntln cntln,LOC107595061 coding downstream 96438 15097021 ~ 15178446 (-)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329,LOC107695241,LOC107598242 coding downstream 195474 15063437 ~ 15079410 (-)
foxe1 foxe1,LOC107598243,LOC107757598,LOC107700287 coding downstream 222008 15050819 ~ 15052876 (-)
trmo trmo,LOC107580156 coding downstream 237193 15033169 ~ 15037691 (-)
anp32b anp32b,LOC107595056 coding downstream 245526 15024645 ~ 15029358 (-)
pspc1 pspc1 coding upstream 251843 15527154 ~ 15581541 (-)
dnajb14 dnajb14 coding upstream 310268 15585579 ~ 15626410 (-)
sugt1 sugt1,sgut1 coding upstream 356754 15632065 ~ 15650309 (-)
snapc3 snapc3 coding upstream 425798 15701109 ~ 15709846 (-)
spp2 spp2,LOC107654271,LOC107707843,LOC107588827,LOC107719734,LOC107556720 coding upstream 791416 16066727 ~ 16069295 (-)
G3570 NA non-coding downstream 45131 15229336 ~ 15229753 (-)
G3546 NA non-coding downstream 270596 15001285 ~ 15004288 (-)
G3502 NA non-coding downstream 426308 14848025 ~ 14848576 (-)
LOC122336348 usp53b,LOC107714652,LOC107572698,LOC107695415,LOC107598280,LOC107700316,LOC108442608 non-coding downstream 500964 14772740 ~ 14773920 (-)
LOC122336242 NA non-coding downstream 502154 14771467 ~ 14772730 (-)
G3577 bnc2,LOC107737409,LOC107737408,LOC107678088,LOC107595060 non-coding upstream 28677 15303988 ~ 15306245 (-)
G3578 NA non-coding upstream 31337 15306648 ~ 15306904 (-)
G3581 NA non-coding upstream 35024 15310335 ~ 15310542 (-)
G3582 NA non-coding upstream 35593 15310904 ~ 15311170 (-)
G3583 bnc2,LOC107737409,LOC107595060,LOC107678088,LOC107598241,LOC107700330 non-coding upstream 38135 15313446 ~ 15317623 (-)
G3571 NA other downstream 43998 15230539 ~ 15230886 (-)
G3515 coro2a other downstream 245264 15020642 ~ 15029620 (-)
G3522 NA other downstream 349521 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 356098 14898201 ~ 14918786 (-)
G3491 gpank1 other downstream 525909 14746829 ~ 14748975 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 793866 16069177 ~ 16073920 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 884381 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 1058891 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1171777 16447088 ~ 16448519 (-)
LOC122330431 lsm6 other upstream 2159406 17434717 ~ 17436707 (-)

Expression


Co-expression Network