XLOC_006575 (si:dkey-191g9.7)


Basic Information

Item Value
gene id XLOC_006575
gene name si:dkey-191g9.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21689267 ~ 21701323 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012709
CATCAAACAACAGTGCCCTTTGGACAGCCATGATTCATATCTGAAGGACTGTCTTTCATGAGGGAGAGTTCACAGTCCTATTAAAGGACACCTGATGCAGGCTCAAACGAACTCCTCGCATATGCATGTTGCATCAATGCCAATGGCTTAACCACCACTGCACCTCCTCATCTCCATATTCTCCTCCTCCTCGCAGTATCCAATCTCCTTCAGCCCTCCACCACATCACACAAATAGTCTTTCCCCagaacactcacacaaacacgggCACACATTCCTCcttcatctctctctttctctctctctcacacacataccctCCTGCCTAGGGATTTGAAGATGTGACTGAGGCTGGTTTGTAATCAGATGAAAGACGAGTATAATCCCGAAGCTCCCTCCATCTTTTTCATTGCTGGAGTGGGGATGCTGAAGGAGCGGACAAGGGCCAGGATGGGTGACGTGTGATGGTGAGTGCTGTACGACGGATTCTGCCTTCATAAGGACCTGGACTGACGCTGCACTCTTGGGAGTCTGGGATGACCAGTGTAGAGAGTGGACAGGTAGCGACGTGCCAGAGAAGACAGTAAATAGAAGCTTCGCCTGTGATTGAGGAACAAGATATCTGATGGCAGAGGCTGGACACACCATATCATTCCCACCAGTGGGAACAATCCCCTCAGATCCCCTTGTAACAGCTGACTGCTGTTCATCAGAGTTGAAAGCTGAAGATGTGCTCAGGAATAGCTCCAGTGAAGCCCCAACAGAGCGCCTAAACCATTGCCAGATTGATCAACACAATGCAAGTCCCCACCGCATTGCTGAGACCCATGTATCCGACAGTGTGTGTTTACACCCAATGAGCCATCAGAATAAACATGACTGTAGTGGGTCACTGATGGTGCATAAGGACCTGAATGATCACAGTTTGTTATCAATACAAAGAAGCCACTCTGACAGCTTGCAGATTTTTAAAGATGCCGCAGCGTCTCCTCTCTACTGTGAAATGGGCGCATTGTTTTGCCAAGGACGAGAGAAGGATGTTTGTGCGCAGTCATTTCCTTCTTTAGTGTGTAAACAGGCCATGCCACTTCAACAAAGCAACACGGTGACCACTTCCATCAGAGCTGGAAGCAGCGGGTCGAGCAGCCCAACTCAACCAGCCAAACACAGTTTCATTCAGATCTGTGAAGTCATTCCAGAGTCTACCTGCCCCAAATTTGAAAAGCCCGTTTGTTGTAACTCTCACTTCCACCATGGAGCTGTCAAGGACACGTTTGCTGCGTATTGCCACCCACAACCTATTCCTGCCCCAGCACAACTAATTCCACACTTGGTAGGAATGGATGAGAGCTACAAGGGCCAAGGACAAACAGGCAACCTGCTTGCTCTTCCTCGGCTCATCTCCTCTGTCAGCGAAACTGGGTTGGATGGTAATCGACTCCTCCGCTGCTGCAATATGGACTGCTCTTGGTCTGGTCCATTGCGTCCAGTTGGCGCCCATCAATGGGTGGACGAAAAGACGACAAGTGATGCGAGTACCATGACCTCACAAGAAGACCTGAGAGATGTAGGAGTGCAGGTGGGTCAGGACTCCAAAGAGCTTCCCCAGCACGTCTTCCCAGAAGTGTGTCTAGTCCAGCAGAAGACGTCAAAGAGTCGAAAGTCTCCAGTGAGGGAGGTGAAATGGGATGCTGAGGGAATGACCTGGGAGGTGTATGGAGCCTCGGTTGATCCAGAAGAACTCGGACTTGCGATTCAGAAACATCTGGAGATACAGATCAAAGAGACTAAGGGAATAGCTGCAAAACTTTCAAGGCAAAACACGACAACATCCCAGCACAGCTCAGGATCCATTCAGAAGAGAAAAAAGGGGTTTTTGGGATCCCTACGCCACCCTGCTTGCTGTTCCGGTACCACGGGTGCAGTAGATTAAACCACGTTTCTAGAATAACCCCAATGCAGCACATTTTGCTGATTTTCACTAGCTCATTAGTAGAGACTCCTAAGATGGAGTCACGCAGTGCTGTAATTACAGGCATTACTAGTTTCCAACTTGTAAAAAGTGTTTAAGTCCTTGTAGAACTTATAAATCGGGAGGTGTAACTTGTACTACCTGACCATTGCAGATATACTGAGATGCCACGTATGGCTATCCTATGAACAGATCATTCCAAGCCTGAGGATGTAAACAGCTCAATGTTGTACATCAGACGTCATTTTGAAATTACAGCTAGTCGAGAGATTCGAATTGTGTAGTCTTGGGGttactcaaaaaatgtgtttgggCATTACTGGGCTAAAGGACCTAATTGAGACATGTAGACATATTCAATAGAAAGATTTATATCCCAAATACTCTCGAGAATTGAATTTGACTGCCAAGCAAGATTCCATATAGGACAGATTCCAAATGGGGGATGTTTTAGAACTTACTTAGCCAACAGCAACAGTCATACATGTCAGAAAAATCTAGTCTTCCTTTCATTTTGAATTCTGCACTTTAAAAggacagctcacccaaaaatgaaacgttcctcatcatttactcacacttactcaagtggttctaaaccaggggtctcaaactcgcggcccgcgggccatttgcggccctcagtgcaatattttgtggcccgcgccgactgCTGTACattgacagaatcagcggagcggggagagagagcgctatccgctccgctgattctatccgtacacatcGGTCAccggcattccccgcccgccgtgtaaacaaaggggcggggatgccggtgacgtcaccatgCACCCCGCCCCTtagttagacgctgtgacgggcgggaagtagGAGGGAACTcacgccggccagaaccaaggtaagctgttcccgcccctgcctgccacttagctacctagctacagcctgcatcttatatatattataggtagatacattacagactggtacagactgatgtgactggagtggggtgggggtgttttatttatacatatatacgcctttttttaggtgagggaatggaagttttgagtgagttcccccacttttttccctgggacttggcctttttgggagcacatatttgtgtgagaagttattctccaccttgaacttcaataagtcaaagtacaggtctagacttaatgatgatcatcttcaagccatactgagggtctcaactgcttccgctctaaagccaaatgtggttcagatttgtgagaagaagcgctgtcaagtctctggcaacAAGGAGTTGgaaaaagatgccatgttcagaagaactgttcataatcttcactcaatgttctattaatgttcaggacacttaatgttcagaagaaataattaaaactgttaataatgacatttgaggacttttttgtgtgaaatcccttatgcggcccagcctcacccagactttgcctcctgcggcccccaggtaaattgagtttgagacccctgttctaaacttttatgattttCTCCTGTGAACACAACTCAAGAAGTTCTGAAGAATAATTGGAAAATTCAGCCAtttacatccatagtaggaaaaatgccatggaagtcaatggctgttttttcctcaacattcttcaaaacatctcagACAGGTTTGGAACATGTGTAAttcaatgtgtatttttatagcatctacttggatgatgcgacggcagccacaggacaacagcgccagtgcgctcaccacacaccagctattgatggAGTGAGCAGATAGTAATAGAGCTAACTCAGTGGAttgggatgattaggaggccatgatgggtgagGGCCGATGAAAGGAATTTGGCCAGACCCCTACTCTTTCGAAGAAGTGCAGTGGGATTTTTTAATgatctcagtttaacatctcactGTCAGTAGAGTGTCCCCTTTACTCATCTGGGGCACTTCACTTtacctgctggcctcactaacaccacttccaacagcaacctaattttcccatgtgttctcccatcgagatactgaccaggctcagccctgcttagcttcagtgagtaactggtcttgggctgcagggtgatatggctgtaacggatgatgagtaaatgatggcagaatttccatttttgcgACTATGTGACAATTCCTTTAATTGCTGTAGACATTTGCATTGTAGatttaatattttagtaatttagtaaaAGATTGTGGGTTATTTTGTAACATATAATTTGTCTTTTTGTTGTTTTCCACgactaaataattattaatattataatacaagTCGTAACATAAAGCAAAACTTGTTTAATTCTATGAAAGCACTGTGATCTGGGTCAGGGTAAAGAGTAACTGTGGCGCCACCTGCTGGTCAAAGCATGAAAGTAATACAAAGGTGTGATATTTTAGTGCAAttccaaatattttaatatattttaaaatgaaatttccGTGATGTTCCAGTCTGCATTGTCACATGATGTTTTAGTAATCATTACTGTTTGTTGCTTAAGATAATTGTCTTATGTTaagtatttaatttttgtttacttttacaaATGAGCCCATCCTtccttaataaatattttattttataaaactctTACTGACCCTAAACTTTCTAAATATTATACTAATATAACAGTACTAATAAATATTAGCATATTAGATGTAGCAGGTGAGCTTATTAGTTCTTACTGTTGATTAGACATTACATTTCTGAATGATACAATTTCCAGTCAGATtcaccttttaaaaataatttataaagggTCTACTGGAGCATGGTGTAACAAGTACGGATTTCTGAAATAGAAGCAGGATTATATTTGGATTTACACATGTTGATACAGAAGTAGAGTCCAGTTTGTTTAGTTATTTGTCAAAAGCTAATCAAATGTTTCACCAGCAGCATTGTTTTTGTCTGTATTCTAATGtaacaataaaagcaatatgACAGATAATTGAa

Function

symbol description
si:dkey-191g9.7 Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN2 (G protein regulated inducer of neurite outgrowth 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-141216-135 Predicted to be involved in neuron projection development. Predicted to be active in plasma membrane. Orthologous to human GPRIN2 (G protein regulated inducer of neurite outgrowth 2).

Ensembl:

ensembl_id ENSDARG00000104084

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012709 True 4934 mRNA 0.44 3 21689267 21701323

Neighbor

gene id symbol gene type direction distance location
XLOC_006574 sprn coding downstream 1091 21682770 ~ 21688176 (-)
XLOC_006573 elovl6l coding downstream 17136 21666521 ~ 21672131 (-)
XLOC_006572 mxtx1 coding downstream 29064 21656713 ~ 21660203 (-)
XLOC_006571 tspan14 coding downstream 38863 21638454 ~ 21650404 (-)
XLOC_006570 NA coding downstream 541885 21146114 ~ 21147382 (-)
XLOC_006576 si:dkey-191g9.5 coding upstream 10961 21712284 ~ 21739142 (-)
XLOC_006577 NA coding upstream 224378 21925701 ~ 21939965 (-)
XLOC_006578 BX649385.1 coding upstream 490038 22191361 ~ 22195168 (-)
XLOC_006579 mmrn2a coding upstream 918361 22619684 ~ 22646134 (-)
XLOC_006580 glud1a coding upstream 977761 22679084 ~ 22699024 (-)
XLOC_006471 BX537274.2 misc downstream 11424362 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 20863042 825904 ~ 826225 (-)
XLOC_006569 NA non-coding downstream 609856 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 957379 20729834 ~ 20731888 (-)
XLOC_006567 CU633804.1 non-coding downstream 1141769 20546967 ~ 20547498 (-)
XLOC_006563 AL954359.1 non-coding downstream 1457517 20227045 ~ 20231750 (-)
XLOC_006582 CR550304.1 non-coding upstream 1076737 22778060 ~ 22784433 (-)
XLOC_006585 BX530068.1 non-coding upstream 1142507 22843830 ~ 22847484 (-)
XLOC_006595 NA non-coding upstream 1511436 23212759 ~ 23217818 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_11111159_11112550 NA coding CI01180000 null 11110801 ~ 11112550 (-)