G3705


Basic Information

Item Value
gene id G3705
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 16020169 ~ 16020517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU5290
ggGCATTTCCCACATTTCTGTCATCCCACACACATTTTGCCAAGATGTAAACAAACAACAGTATCTTATAATTGTgactatacatttaaaatttcaacataatatacatattttgacaTTATCTCTTTTAATTAGGTTTTCATATCCGAATTAAGAATTTATACTTAGGTTTGATGTAAGTCCAGcatcataaaatacaattatccTGTGCAATATTTTGATTCTCATACATCGACAaactaaaatgatcaaattttcAGTGCCTTTTTTTGGGCTTCAATCCTTTCGACTCAAAGCCCCTGCATTTAAACATCAGTCCCAATAAGGCTTTCGTCAAAAACAAGTCAAG

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection
ko05145 Toxoplasmosis
ko05310 Asthma
ko05320 Autoimmune thyroid disease
ko05321 Inflammatory bowel disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU5290 True 349 lncRNA 0.32 1 16020169 16020517

Neighbor

gene id symbol gene type direction distance location
psip1a psip1,LOC107658176,LOC107572235,LOC107742007,LOC108439950 coding upstream 329322 15657297 ~ 15690847 (+)
spag5 LOC107714621,LOC107695699,LOC107595089 coding upstream 970246 15038404 ~ 15049923 (+)
coro2aa coro2a coding upstream 995288 15005607 ~ 15024881 (+)
uso1 uso1,LOC107714641 coding upstream 1015929 14988397 ~ 15004240 (+)
g3bp2a g3bp2,LOC107695289,LOC107714642,LOC107700328,LOC107757577,LOC107598276 coding upstream 1032091 14980372 ~ 14988078 (+)
raph1b raph1b,LOC107707841,LOC107588825,LOC107719733,LOC107556694,LOC107654246 coding downstream 3422 16023939 ~ 16064272 (+)
cpb2 cpb2 coding downstream 53798 16074315 ~ 16078793 (+)
zc3h13 zc3h13,LOC107588823,LOC107707838,LOC107654272,LOC107719732,LOC107705029,LOC107556716 coding downstream 58893 16079410 ~ 16092907 (+)
tm9sf2 tm9sf2,LOC107654273,LOC107556717,LOC107719731,LOC107705039,LOC107588853,LOC107707817 coding downstream 72685 16093202 ~ 16104199 (+)
zic2b zic2b,LOC107707837,LOC107588821,LOC107654274,LOC107699076,LOC107719739 coding downstream 96573 16117090 ~ 16119734 (+)
G3696 NA non-coding upstream 177370 15842311 ~ 15842799 (+)
G3695 NA non-coding upstream 181573 15838358 ~ 15838596 (+)
G3693 NA non-coding upstream 262024 15757933 ~ 15758145 (+)
G3680 NA non-coding upstream 320735 15699223 ~ 15699434 (+)
G3674 NA non-coding upstream 325470 15694387 ~ 15694699 (+)
G3707 NA non-coding downstream 84555 16105072 ~ 16105273 (+)
G3846 NA non-coding downstream 493433 16513950 ~ 16515088 (+)
G3902 NA non-coding downstream 602300 16622817 ~ 16701710 (+)
G3952 NA non-coding downstream 782870 16803387 ~ 16805316 (+)
G3987 NA non-coding downstream 806510 16827027 ~ 16827368 (+)
G3647 NA other upstream 366788 15653093 ~ 15653381 (+)
G3599 NA other upstream 521489 15478098 ~ 15498680 (+)
bnc2 bnc2,LOC107595060,LOC107737409,LOC107737408,LOC107678088,LOC107598241 other upstream 702545 15178603 ~ 15317624 (+)
hemgn hemgn,trmo other upstream 985369 15030944 ~ 15034800 (+)
G3380 LOC107572695,LOC107695836 other upstream 1228381 14723545 ~ 14791788 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other downstream 43754 16064271 ~ 16069915 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other downstream 1530956 17551473 ~ 17610745 (+)
lsm6 lsm6 other downstream 1876018 17896535 ~ 17898546 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other downstream 2226733 18247250 ~ 18284644 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 3500567 19521084 ~ 19522399 (+)

Expression


Co-expression Network