G4356


Basic Information

Item Value
gene id G4356
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18714947 ~ 18715231 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU6217
GGGGCATAGGTCAcctttaaaacctttttctaCTTGATTTAACCCATTAAAGTTAGTTTTGTTGATATAAGatattatatcaatattttagacaagaataaaaacaattaatatcagtgttcatttaaagtattttgtaaCAACTTTATTAgcatctttgttttaaaaaagtattaatttcacaaattatatatttgaagcAAATGTTAGACTATTCAATCTCTTGGAGAAATTGTTATCCTGCAAACATTaccataaaagctttttttcatatCTGATTTAATC

Function

GO:

id name namespace
GO:0004852 uroporphyrinogen-III synthase activity molecular_function
GO:0016835 carbon-oxygen lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function

KEGG:

id description
ko00860 Porphyrin and chlorophyll metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU6217 True 285 lncRNA 0.24 1 18714947 18715231

Neighbor

gene id symbol gene type direction distance location
cep44 LOC107676682,LOC107558780,LOC107670817,LOC107737107,LOC107752226 coding upstream 21559 18687317 ~ 18693388 (+)
galnt7 galnt7 coding upstream 117310 18584156 ~ 18597637 (+)
trnas-aga NA coding upstream 136116 18578750 ~ 18578831 (+)
galntl6 si:ch211-15e22.3,galntl6,LOC107670789,LOC107676688 coding upstream 137360 18431138 ~ 18577587 (+)
sparcl1 sparcl1,LOC107550753,LOC107742536,LOC107670764,LOC107665481,LOC107598725 coding upstream 388086 18304771 ~ 18326861 (+)
wdr17 wdr17,LOC107670895,LOC107676687 coding downstream 124719 18839950 ~ 18858945 (+)
spcs3 spcs3,LOC107752235,LOC107670941,LOC107550835,LOC107737105,LOC107676690,LOC107558782 coding downstream 153451 18868682 ~ 18872848 (+)
tenm3 LOC107737101,LOC107670970 coding downstream 475862 19191093 ~ 19434722 (+)
irf2a irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969 coding downstream 749069 19464300 ~ 19469429 (+)
sod3b LOC107671542,LOC107748835,LOC107574198 coding downstream 809617 19524848 ~ 19526586 (+)
G4345 NA non-coding upstream 6518 18706209 ~ 18708429 (+)
G4331 NA non-coding upstream 115288 18598356 ~ 18599659 (+)
G4296 LOC107670772,LOC107742537,LOC107551986,LOC107734553,LOC107665480,LOC107598727 non-coding upstream 403606 18309934 ~ 18311341 (+)
G4166 nr3c2,LOC107550687,LOC107670737,LOC107742541,LOC107654985 non-coding upstream 499863 18213305 ~ 18215084 (+)
G4105 NA non-coding upstream 967848 17745851 ~ 17747099 (+)
G4360 glra3,LOC102780741,LOC101174559,LOC102299625 non-coding downstream 7844 18723075 ~ 18723295 (+)
G4361 NA non-coding downstream 32003 18747234 ~ 18747753 (+)
LOC122333031 NA non-coding downstream 278530 18993761 ~ 19176827 (+)
G4531 NA non-coding downstream 809315 19524546 ~ 19524780 (+)
G4553 NA non-coding downstream 859180 19574411 ~ 19574760 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 430303 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 816401 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 1104202 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 2645032 16064271 ~ 16069915 (+)
G3647 NA other upstream 3061566 15653093 ~ 15653381 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 805853 19521084 ~ 19522399 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 1000322 19715553 ~ 19777050 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 1427230 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 1526587 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 2606231 21321462 ~ 21361440 (+)

Expression


Co-expression Network