G4360 (glra3,LOC102780741,LOC101174559,LOC102299625)


Basic Information

Item Value
gene id G4360
gene name glra3,LOC102780741,LOC101174559,LOC102299625
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 18723075 ~ 18723295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU6221
ATTGAATAGAGGACATTTCCGTTCTTGAATATTCTCAAGAGCTTGTTATCAGTGGTGACCTCGTGGAAGTGCGCTCCCTTCTCGTTGGCGAAGAACAGATCAGGCTTCCAAATGGAGTCTAACATTGAGGGATCCAGGTCCAGGGAGTCATCTGGGTACTCGCTGTAAGCTAACCGAGGGTCGTTCCACTGCTGCCGGAGAAATATGTTCACTCTGTAATc

Function

symbol description
glra3 Enables extracellularly glycine-gated ion channel activity. Predicted to act upstream of or within chloride transport and ion transmembrane transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be part of chloride channel complex. Is expressed in hindbrain and spinal cord. Orthologous to human GLRA3 (glycine receptor alpha 3).

NR:

description
PREDICTED: glycine receptor subunit alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6221 True 221 lncRNA 0.48 1 18723075 18723295

Neighbor

gene id symbol gene type direction distance location
cep44 LOC107676682,LOC107558780,LOC107670817,LOC107737107,LOC107752226 coding upstream 29687 18687317 ~ 18693388 (+)
galnt7 galnt7 coding upstream 125438 18584156 ~ 18597637 (+)
trnas-aga NA coding upstream 144244 18578750 ~ 18578831 (+)
galntl6 si:ch211-15e22.3,galntl6,LOC107670789,LOC107676688 coding upstream 145488 18431138 ~ 18577587 (+)
sparcl1 sparcl1,LOC107550753,LOC107742536,LOC107670764,LOC107665481,LOC107598725 coding upstream 396214 18304771 ~ 18326861 (+)
wdr17 wdr17,LOC107670895,LOC107676687 coding downstream 116655 18839950 ~ 18858945 (+)
spcs3 spcs3,LOC107752235,LOC107670941,LOC107550835,LOC107737105,LOC107676690,LOC107558782 coding downstream 145387 18868682 ~ 18872848 (+)
tenm3 LOC107737101,LOC107670970 coding downstream 467798 19191093 ~ 19434722 (+)
irf2a irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969 coding downstream 741005 19464300 ~ 19469429 (+)
sod3b LOC107671542,LOC107748835,LOC107574198 coding downstream 801553 19524848 ~ 19526586 (+)
LOC122340556 NA non-coding upstream 5980 18694169 ~ 18717095 (+)
G4356 NA non-coding upstream 7844 18714947 ~ 18715231 (+)
G4345 NA non-coding upstream 14646 18706209 ~ 18708429 (+)
G4331 NA non-coding upstream 123416 18598356 ~ 18599659 (+)
G4296 LOC107670772,LOC107742537,LOC107551986,LOC107734553,LOC107665480,LOC107598727 non-coding upstream 411734 18309934 ~ 18311341 (+)
G4361 NA non-coding downstream 23939 18747234 ~ 18747753 (+)
LOC122333031 NA non-coding downstream 270466 18993761 ~ 19176827 (+)
G4531 NA non-coding downstream 801251 19524546 ~ 19524780 (+)
G4553 NA non-coding downstream 851116 19574411 ~ 19574760 (+)
G4579 NA non-coding downstream 1019867 19743162 ~ 19778083 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 438431 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 824529 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 1112330 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 2653160 16064271 ~ 16069915 (+)
G3647 NA other upstream 3069694 15653093 ~ 15653381 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other downstream 797789 19521084 ~ 19522399 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 992258 19715553 ~ 19777050 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 1419166 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 1518523 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 2598167 21321462 ~ 21361440 (+)

Expression


Co-expression Network