LOC122349798


Basic Information

Item Value
gene id LOC122349798
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 20703476 ~ 20718890 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7087
GAGCGTAAGAGATATATTTCCTGTTTCAGAAGGAGAGAAACAGACATGAAAGCAACAACATGGCTGACATCGCTGTGACTGGATTAGAACGCGGATATTTTCCCTGTGCTGTACACTTCTAAGACGAAGGCTGTGATAgactttgaaatgtttttatttcttctggTGCAAATATGGAATATGTACTCAAATCACAAAGTGTGCACACTGTTGAGCCTGAAGGAAGGTGGTCGGCTCCAGCTGGGATGAAGGTCCTAAGGCAGGGAGGGCAGTTTGTTTCTCACACTCCCTCTAACAAGTTACAACATCTTCCTCTTCTCAAACTCCTGTACATGGTGCTGCCCAGCTGAGCCGGAGACATGCTGACGACGACTCCAGCCGACTGCAGAGCTGCGATCTTCTCTTTGGCACCCCCCTTGCCTCCGGCAATGATGGCTCCTGCATGCCCCATTCTCCTTCCAGGAGGGGCCGTCAAGCCAGCAATGAATGACACAACTGGCTTAGCATTGACACCCTaaagagAGAGTTGTGCTGTTTCAGGTACTCTGCTGCATTCTCTTCTGCATCTCCTCCAATCTCTCCAATCAGAATGATGCCCTCAGTTTTAGGGTCCTGCAGGAACACCTCCAGGCAGTCAATGAAGTTCGTACCATTAAAAGGGTCTCCACCGATGcctaaaaaaaacccccaaaaaaac
>TU7094
TTTTTTGAAGCGCTGCGGTAAGTCTGAGTCACTGCTATTGGCATACAGCAATACCTCatgcaaattgcattttttttttatcagtttttatcgcctctctctctcactcgcacaggtatgttcatttaaaaggatTGTGATGAACAACCATTGCGGCGACAGAGATGAATCATACGGCCTGTATATCACTCCATGTTTACTTCTAGAACGCGCCGCAGCATCTAATTACATGGATAAACACCCAAGAACGTTAACTATGCAAACTTGGTACTCCGATTTCACAGCGTTTggaaaattaaaggaatagttcacccaaaaatggaaatgtgtcatcattcactcacccaccacttgttccaaacctgtacgagtTTCTTTCACAAATCCAGATATTTTCAATGTCAGTAACCCACAAGTGGCTACTTGCTACAGGAGAAAGAAACTCTACTactaaatgaagacagaatgaatgcctttaaaacaaatgtatgggAGTTTTAATGAGCTTCTGTTTCTTTTCCACACCAACGTCCGTGAGAAGCCTGGTGAGCGGGAACAGTCAAAATGGCAGACTGCTTTACGGCAGCAACCAACGAACATGCGCTGTCCACCTTATAACAGtgaatttttccttttatttttactctctgtaaaaaaaa
>XR_006251499.1
GTAAGTCTGAGTCACTGCTATTGGCATACAGCAATACCTCatgcaaattgcattttttttttatcagtttttatcgcctctctctctcactcgcacaggtatgttcatttaaaaggatTGTGATGAACAACCATTGCGGCGACAGAGATGAATCATACGGCCTGTATATCACTCCATGTTTACTTCTAGAACGCGCCGCAGCATCTAATTACATGGATAAACACCCAAGAACGTTAACTATGCAAACTTGGTACTCCGATTTCACAGCGTTTggaaaattaaaggaatagttcacccaaaaatggaaatgtgtcatcattcactcacccaccacttgttccaaacctgtacgagtTTCTTTCACAAATCCAGATATTTTCAATGTCAGTAACCCACAAGTGGCTACTTGCTACAGGAGAAAGAAACTCTACTactaaatgaagacagaatgaatgcctttaaaacaaatgtatgggAGTTTTAATGAGCTTCTGTTTCTTTTCCACACCAACGTCCGTGAGAAGCCTGGTGAGCGGGAACAGTCAAAATGGCAGACTGCTTTACGGCAGCAACCAACGAACATGCGCTGTCCACCTTATAACACATGCTGTGTGTTTGATACTGAAAATGGCAAGCGCTGCGATAGAGCCAAATATGTTTGAGTCAGATCTCGAGGAAGACGAAACAAGGCAACGACTGCAACAGTCTAAGCATGGTAATTGCTTTTGCTTGCTTAATTGCTTCATTTTTGGTATATAGTTTAAAAGGgactattattatttgtcttgTGACAAAAGATGTACGCTGGGATGTGCTGATTAACACTTATAATTGAAAAACTTGGTGTACtacaaaaataactgcattgCCTTTGAGGAAAAGTTTGGAGTTCTGAAACTTGCAGTACACCGTTTTTTTGTAGAGCATTATCTAAATATGTTTAAGCGTAGCATGGGTGTAAATAACGAGACTATTTCGATTCTCCATTTTGTGACCACCTTTAAAatctatgctttatttttttttggttttgtgcaTTTCCTAAAATGCTGTCCCATTCATCTGCTGTTTGTTCTATGGGACGTGGAGTGCATTTAATGTCGTTCTCATCCAATTCAGAAACCGAGGCCCATTGCAGACAACGGCGGCGGCGACGGCGGCATTCGGAGTGACAGACTTAACAACCATTTTTGAGACTTATCACACAACGAACAGCACTTACCAGTGCCCTAAAGCCTTTTGGGATTGAGGAGGAGGTGGGAAATCTGAACTTTTCTTGCGCCTTTAGACCCATAATGAAAGGCTTGTAGCGATTTTCACGCGTGCCCAAAATCATTCTGAATATATTAGTCATCTCATCTAGCAGGCCTACGTCTGCGCAAATGTAGCTCGCCGGAAGGTCTCTGGTGTCTGGCTTTTGTTAATGAACAATTTTGGTTGATTAATTATGAACAACTTGTTAAGCGCATTGGTGACTCTAAATTACAGGAGTATTAGGTCTCCTTTTCTAAACACATACAGCTGATTTCCCTGTAGAAATGAGAGGTGGTGTTCTTAAAAGTCGTATGGGATTTCTTTACTAAAACTGCATGTTTGGTGTAGCGGCTGTTCAATAAGTATTACTGGATTAATGTGATGCGATGACATGAGCACTGAGGATTCAGCTCAGAATCCAGCTTAATAATGATTCATGTAgctaatggttttatttaaagcaataaataagtAAGCTTTTAATAATGGAACGCAATTGTGACCACTGATTAACTTAAtctgtaaatacaataaaatttatatacattttatagccAAAGTTTGCTTACCGAAGAGGGAGAAATAGTTTAAATGGGTATTTTCTTGAAAAACAGCCACCATTTGTAGTACagaataaagataaagatatcATATTCGCCAAATGGTCATTTCTGTCAGTACAAACTGCTAAACACTACATAAACCAAGCAAAGtgtgaaaaactgtttaaaatatcattCGTATGACCCATTCACATATCTGATTTCagccaaaagaaaaatgttgatattaatgtatgtattgATGACTGTGATTTTTTTACTGGGTTAATTTAATATGGCTCATAAAATGAGATACAGACCGCTACAAATACCTACAAAAAAGGATGGACAACGTGTTCAATTCAAGCAACAAATCACTCTGCCCGTGGCCGCAGGATTCACAAACAACTACGAGTCGCTCATATGAGCTGTTATATGAGTGAGACATTGATTCGTCTGAGAGGCGGAGGATTGATTGGGCAGTTGCGTCCTTACAGACTGAGATAACGGTTTAActacagaaggagagagagcaaTGGAGGTGAACAAAAGATATATTATATTGCCGAGGCCACAATGAGATACTTGCAGTCTGGCTACCCTGGagtgctgaatttatttgacttagtgCCCCTTTTGAAAACAGCAAGCGTGTTAGCTTTCCTTTCAGGTACCTTAAAGTACAGCAAGGGCCCAAACCACTGAGCAATCGTACAGTCCTGAAAAAcagattctttggtttttcagcatcatttacATACTTGGACCAATTCCAACAACGACTGTaggattttgagatccatcttttcacactgaagGACTCAAACGCAACTATTGCAAAAAGTGCAAACACTTAATGAAAGGCGATGCTTTAAGAGCGTGTTTCATTTTGAACAGAAtgaaagtgtacatttttcttattttacctaaatatcacttttttttttgcttcatttagTACTGCACTTCAGAAGCCGCATGCATTTCTCCCACGAGACACTTCAAATTTACACTGATCTTGAAAAAGGTTTCACTTCCAGCATCtcaatgcataatgcatttgtgTAACTTTGTTTGAACAGTTGCATGTAAGTCCCTCGGTTGGAGGCCATTCTTGGAACGCTTTTAAATACGCAATAAATACTGGAAAACCAAAGGATTTGCTGGACCTGAagatttttttcctgaaaaaaataaataaataaaaaagtgggaCAAATAAGGGACTCATGCACAGctaatcacaaataaataaaaataaataaaaaatattaatattaaaagggatagttcaccaaaaaaaaaaaaattttgtcaatatttactcccgctcatgtcatttcaaacccattatacttttgttcatctttagaacacaaattaagatatttctaaTGAAATAACCCTACATAGACAGGAACAGATCTACCAAAAAGGTAATAAGGTTAGGTAATAGTAAGGTAATAATCACTGAAATAGTagtttaactgtaattttagGGAGCTACAAGAAtagagcaaagaaaacaaaaataacatagcTTTATAAAACGATGGttgatgaactatccctttaagaatctGGCAGAAACTTTTGAAAAgggcaatttttattttctcttgtgAACTATGCAAGCgtcttttatgtaaaatgtattatgcaggtcagtgctaaataaaaaaaacaacaacatgcattttgcattacccctcttattttggtaaaatattcAACATGTTGCAGATACTGCGAAGTGTATATAAAATTTTGACCACAGCTGtaagcatacattttttttttcatcatttagaCGCACCGCATTGaacatataaataacacattCGCGTGAATCTGGAAGTAAAGGCCCACGCGCGCGCGCATCTTGCGTCTTTCCAGGGCTGCGGTGCGTTTGCAAGAGTTCAGTGGGTGTGCGACGACAAAACTCGGCTAAAACCTGACGTGCGTGAGAGAAAAAGCGAGTTATTTTTGTTCGTATTATCGCTTGTCACACTGCCAATGCGCAGCTCCTCATAGCCAAATCGAAGGCACTGAGGTATGAATGAAAAAGCGCAGTGCGCGCCGCTGCTTCATTAGGTATGCGCAAAGATAACGAGCGGCACGGCAGCGCCTGGCCACTGTAACGTTCCGGGAGAGCAGATACCCTAAGCCCCCAAACAAATAAAGCCTTAAATTCGACCTCCAATCTTTATTATGGTAATTTCTCTAATGCAGATTGGAACGTAATTGGTAACAATATGTACACAGCCTAATCTTTTTCTAGGCTGACAGTGACGAACTGGAGATAAGCATACAAAGATGTCTGGTGAAAGAGGACATTTATAGGCCCCATTAGCAtctattttttggtttctacaaaatgttttttgtagaaGCTGTATGAAGCTAAAGAAACGGTTCAccaaaatatacaatttctgTTGTGATTTACTCACCCGCATGTCATTCCCAAAATCAGaccataacatttttttttaaacactgaacaCGAAAAAAATTCTCTCCCAAGTCTCTTTCATAAAGCCATAGAAGCCTACAAACTgtaatagctttttttgtgtgcaaacggaactaactttttattattatttaatgacagAACACTTTGCGTCGCACCAGAGGTTTTTATAGCGGAATAAGggttttcaaattattaaaatgttcttcagaaaagaaacaaaaatagctCTTTTGAAAGATACTTTGGGGAAACCAGTGCGGTTCTTCATATGGCGTTGCTGCGAAAAAACCCTTTtggaagttttatttttaaggatgTATAAATTGACATGACTCTGAATCTAAATAGTGACATTCATTCATGGGTTATCCATCTTTTAAAGTTTAGAAGAATAAGACTTTGAGTCTGACCAGCCGCATTCAGTGTGTTCGTTGTGTCTCAAAGTTATTCATACATTTCCATAAAGTATTTTATAGTAAGCTCCCATGAGacccagtcttttttttttgtatgaaaagaTACCGTGTGGAAGAGCTGCGAGGAATGGTAGTGGAAGTGGTGATGATGATGCATGACAATGGAGATAATGCATCTTTATGATAATATGAAGGGTCTGCATCTGTATCTGTGTTAAGTAGCAAGAaacttccatttttttcttcccatGCTGTGTATTTATAGAGCTTTGCTACTATGACAAGCTGCCACTGATGTAAAATGTACCGTCAGGGTTGTATGACGTAGTACACAAGTAGAAACCTTGCCGTTTTAGACATTTCATGTCATTATTAACATCTGCAGCAACCTAATGGAAGTTGAATCAATAAAAAGCGCAACCCTTTACTGATTTAGCTGTCAAAATCGGTGcggtttaaaatgataaatgctaCTTTTTCCAAGCTGTCAGACACCACATTTAACTTTACgtgaatgaaaacaaggctGAGAGAAAGAAGTACAGCCTGTTCAATGGCTTGTACTTTTGTTCACCTTAGTGTCGATCATTCAGCTGCAagatgcaacatttaaaatgtatttcaagaACATTTCCAAAACGACCAGTggacatgaattaaaaaaaaaaaaagaagaaaaagaaaacatgcattatgAAAATCAGAAACGATAGGAGACGATGTATATTTTTTCCACTTCTACATTGagttgaaaatgttttggggGTGACAAAACCAGATTTGCTCAAGTTAGTTAACCTGGATATGGCTGAAATTGAGTTGAAACTAAGttgcaattaaaactaaaagtttgACGTTTAATctcaaaagtaatattttaatagactgCATTAGTGCCAGTTCACGTTTTTAACAGCACAGGTCCTGGAATCATTTTCACCTTAAAAGGTTTGATTAAAAGTGTTGAAATGAGTCACTAAGTAGTAAATCACagcaattataaaaatgttaaattactgATTATCTATGTATaaatttcaaaagtattttaatgtattgtggTTGAGAGTTGCAAGATGCAAAAGAAGCATTAAAAACGTGAACCATGAGATCAAATTGAAATAATCAGCTCCTCAACAATACCTCAGTCCACAGATTTGAAGGACGCTTATTAGGATCTACAAAGATGAATACAAATTACTCGACTGCACTTTATCTAAAAGTGAGCTCATAACTTACAAGCGTTAAGAACTAAAAGAGCAACCATACGAAACAAAGAGTTAGTTACAAACTAAACTAGTTCCTAAGCCATACAGCGTGAACTTTCTGTCCCAATTTAAGAAAGAGTTCACGAACAACTGGTACAATACGTCTACCCTAGTGAGCACTAATAAGCTCAAGTCTTATATCTAAGAATAAAAGCTGGTACGCATCCACACATTTTGCGCCACTGTAGCATTAGATATCACACAGTCAGCGAATCTGTGATCATTTTCTCAAAGTACGTGTCCCAATTTCTGTTCGCCACAAAGGCAGATCCAGAGACGCGATGTGTGTCAGTTGAAGAACTCATCTCACTCAGTGTTTTTCCCGCCCCTATTCTTCCCATTACAGATCAGCTGGAGGGCTGTAACGATACAGTCAGCGCACGATACATTCGCTGACATTTCCTTGCTGACCTCCTCCCACTCATTCCACACAAATTGGTGTTATTGAAATCTGAGCAAACTCGCGCATTTCTCCGATACAGACAACCTGTGCAACCTTGCATAATTGAAGCTGATAAATATGTGATTCCAACTAAGAATATTCATCAACTCTGAGCACTTCTGAAATGCACCTGGCAAGAGaacaaatttgcattttcattctttaTCGGAATAAAATGTGAATGCATGTCATTAGGCAGGAGAGATGCAATTACAGGGCGAAAGGAGAAAGTCCTCCCACACACATTTTACCTTCCAGTGAGGCATGTCAGAATTAATAAACCTGTGTCTGCAAATGAAAATCCTTGCTAAAAGCCTGGGACAGGTGACATGCAGTTCCGCTCTTTTCATTGCAAACTAGATTCCAGTAATTTAGTCCATTTAGCGCTCCAATTTCGTCACGCCAAAGTAAAAGTTGTCATACGAAAAAGACTAAATAGTCCATTCTGCGTCAGCTTCCGTTAAAGCTGTGAATGACCAGCATTACCAGACGATGACGTCTTCGGTAGAGCTATCTAAACCTGTCCTGGCCATCTTCACGTCTACAATTGTGCCTGCCATACGGAGCAAAAGCTGTAGAATACGGGAGAAAATGACTGTGCTTTTAATGGCACAGAAAAGTGACATTTAATGCACTCAAAGACTCCAGAAGAAGCCAGAAGGTCACGCCGAGCCAGTGCGAACTGCTAACGGAAGGAACGTCTAAGGTTTTAAATTGCACAAATGAGTTGTAATGCAAAGGgtcaaggtcaaaaaaaaaaaatcccacattAGATCTCACCGAGGGGAGATGCATTCATCAAGACAGCCGAAGGGACAAACATGCAATGAGCTGCTGTCGATGaatgaagaatgaaaaaaaaaaatcaactactACGAGGAAGAGCGTAAGAGATATATTTCCTGTTTCAGAAGGAGAGAAACAGACATGAAAGCAACAACATGGCTGACATCGCTGTGACTGGATTAGAACGCGGATATTTTCCCTGTGCTGTACACTTCTAAGACGAAGGCTGTGATAgactttgaaatgtttttatttcttctggTGCAAATATGGAATATGTACTCAAATCACAAAGTGTGCACACTGTTGAGCCTGAAGGAA

Function

GO:

id name namespace
GO:0065003 protein-containing complex assembly biological_process
GO:0043933 protein-containing complex subunit organization biological_process

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU7087 False 697 lncRNA 0.32 3 20703476 20711454
TU7094 False 659 lncRNA 0.50 1 20718232 20718890
XR_006251499.1 True 7508 lncRNA 0.38 2 20711230 20718873

Neighbor

gene id symbol gene type direction distance location
cisd2 cisd2,LOC107552739,LOC107746991,LOC107556804 coding downstream 7709 20693265 ~ 20695767 (-)
LOC122344926 LOC107730532,LOC107664579,LOC107674210,LOC107746658,LOC107556811 coding downstream 253357 20445132 ~ 20450119 (-)
LOC122345104 LOC107552254,LOC107664557,LOC107730505 coding downstream 269105 20430808 ~ 20434371 (-)
cabp2a cabp2a,LOC107556818,LOC107551591,LOC107730525,LOC107674218,LOC107746641,LOC107664568 coding downstream 275665 20413591 ~ 20427811 (-)
ctnnd1 ctnnd1,LOC107664559,LOC107746596,LOC107674216,LOC107730519 coding downstream 301760 20377317 ~ 20401716 (-)
LOC122349971 lrrtm2,LOC107680618,LOC107750357 coding upstream 662811 21381701 ~ 21384924 (-)
LOC122348874 LOC107552383 coding upstream 692973 21411863 ~ 21415844 (-)
LOC122342190 LOC107689477,LOC797212,LOC107682957 coding upstream 820876 21539766 ~ 21548066 (-)
smox smox,LOC107689473,LOC107551688,LOC107551695,LOC107692173 coding upstream 849212 21568102 ~ 21577369 (-)
fbxo41 fbxo41,LOC107689471,LOC107692170,LOC108260496 coding upstream 903475 21622365 ~ 21663567 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1178 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 234461 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 243292 20459541 ~ 20460184 (-)
G4924 LOC107556812,LOC107674268,LOC107730535,LOC107552263 non-coding downstream 258682 20442952 ~ 20444794 (-)
LOC122345304 NA non-coding downstream 437293 20265285 ~ 20266183 (-)
G5047 NA non-coding upstream 894028 21612918 ~ 21620581 (-)
G5327 NA non-coding upstream 1325012 22043902 ~ 22044137 (-)
G5366 NA non-coding upstream 1629624 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 1693572 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 1715723 22434613 ~ 22438354 (-)
G4958 NA other downstream 16736 20683842 ~ 20686740 (-)
timm10 timm10,LOC107674252,LOC107746912,LOC107556822 other downstream 334365 20367129 ~ 20369111 (-)
zdhhc5a zdhhc5a,LOC107730508,LOC107551501,LOC107746524,LOC107674225,LOC107556824,LOC107664565,LOC108412478 other downstream 390528 20289317 ~ 20312948 (-)
si:dkey-9i23.16 NA other downstream 562897 20137035 ~ 20140579 (-)
cdk2ap2 cdk2ap2,LOC107684972 other downstream 1164330 19535964 ~ 19539146 (-)
ctnna2 ctnna2,LOC107689479 other upstream 187280 20906170 ~ 21410571 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other upstream 830727 21549617 ~ 21564077 (-)
G5104 NA other upstream 999249 21718139 ~ 21766284 (-)
G5108 NA other upstream 1005497 21724387 ~ 21772762 (-)
LOC122348907 NA other upstream 1042991 21761881 ~ 21799744 (-)

Expression


Co-expression Network