G5327


Basic Information

Item Value
gene id G5327
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22043902 ~ 22044137 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU7636
aaataagtggtgctttgagtttttattggcatttcagatgttgcagcattattgcttgtacttgtagaagttgatggcaaaagagctgttgtttgaacagtagatgttgttggaaaaagcgcagtgcttttgatagttgttgtcagtggcatttcaggtgttgaagttgatggcaaaacgtttgttgattgaactgtagatgatgctgttgacaaataagtggtgctttgagtttt

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
TU7636 True 236 lncRNA 0.49 1 22043902 22044137

Neighbor

gene id symbol gene type direction distance location
zgc:111983 NA coding downstream 92748 21946861 ~ 21951154 (-)
LOC122345057 NA coding downstream 137347 21905701 ~ 21906555 (-)
rps6 rps6,LOC107551827,LOC107603014,LOC107720314,LOC107676127,LOC107746729 coding downstream 138751 21901467 ~ 21905151 (-)
smu1b smu1b,LOC107720315,LOC107692159,LOC107746727,LOC107551820,LOC108431794 coding downstream 143376 21890352 ~ 21900526 (-)
trnat-ugu NA coding downstream 159712 21884118 ~ 21884190 (-)
ddx39aa LOC107676896,LOC107551870,LOC107603018,LOC107692155,LOC107712218,LOC106587357 coding upstream 23928 22068065 ~ 22072544 (-)
LOC122347503 LOC107712219,LOC107552443 coding upstream 67375 22111512 ~ 22118077 (-)
si:ch73-90k17.1 NA coding upstream 75209 22119346 ~ 22122849 (-)
f8a zgc:101679,LOC107551875,LOC107676892,LOC107712230,LOC107692150,LOC107603023,LOC107718725,LOC108428241 coding upstream 84206 22128343 ~ 22132730 (-)
si:ch211-243a20.4 NA coding upstream 88725 22132862 ~ 22136035 (-)
G5047 NA non-coding downstream 423321 21612918 ~ 21620581 (-)
LOC122349798 NA non-coding downstream 1325012 20703476 ~ 20718890 (-)
G4946 suclg1,LOC107674246,LOC107746879,LOC107730526,LOC107664570,LOC107578564 non-coding downstream 1341604 20613916 ~ 20702298 (-)
G4934 NA non-coding downstream 1574887 20466162 ~ 20469015 (-)
G4930 NA non-coding downstream 1583718 20459541 ~ 20460184 (-)
G5366 NA non-coding upstream 304377 22348514 ~ 22382972 (-)
G5368 lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931 non-coding upstream 368325 22412462 ~ 22414007 (-)
G5395 NA non-coding upstream 390476 22434613 ~ 22438354 (-)
G5369 LOC107746262 non-coding upstream 400821 22444958 ~ 22446648 (-)
G5404 NA non-coding upstream 481979 22526116 ~ 22526422 (-)
LOC122348907 NA other downstream 244158 21761881 ~ 21799744 (-)
G5108 NA other downstream 271140 21724387 ~ 21772762 (-)
G5104 NA other downstream 277618 21718139 ~ 21766284 (-)
si:dkey-37g12.1 LOC107692174,LOC107711524 other downstream 479825 21549617 ~ 21564077 (-)
ctnna2 ctnna2,LOC107689479 other downstream 633331 20906170 ~ 21410571 (-)
G5356 LOC107561873,LOC107676873,LOC107712236,LOC107692142,LOC107603029,LOC107718585 other upstream 215302 22259439 ~ 22328929 (-)
LOC122348696 sept3,LOC107718600,LOC107551931,LOC107603027,LOC107692148 other upstream 228681 22272818 ~ 22287521 (-)
atp11a atp11a,LOC107676866,LOC107692133,LOC107718450,LOC107746295 other upstream 495547 22539684 ~ 22602648 (-)
itsn1 itsn1,LOC107746280,LOC107718832 other upstream 820694 22864831 ~ 22903414 (-)
G5468 cbr1,LOC107746284,LOC107560976,LOC107692178 other upstream 869763 22913900 ~ 22916405 (-)

Expression


Co-expression Network