XLOC_006577


Basic Information

Item Value
gene id XLOC_006577
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 21925701 ~ 21939965 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013480
ACATTTAGTTTTCGAATCAGAAAACTTTGAAAAGCTTAACACATTATTGCTACAATTTAATCTGTGGAGCTTCTGAATAATCACATCGTCTGTGTTCAACTGAAACGTCAAAATTCAGATGTTAATACATGAGTGCTGACCTTGGACTTGCTGCTATTCCTGCCCAACACAAAATAAACcaacagcaaaataaatatgatttacatGTAGTGCGCTGGTTCTTAGTGCATGTGAGAGTCTCTTACGTTTTCTCTGTGTGCATGTCTGAGGGAAGCACGGAGCTCTCAGTCAGTCAGCGGGAGAGAAACTTGTGTACTCGGTCAGTCTGTTCAAGAGCAGATGAGTTTTAATGTATTCTGCGCCAAATTTATTCCAAACCATAGTCCCTGTTGTCTAGACTCAGTCATCAACAAATAACATCCTAGTTTATATGAAAACTCCGACTTGGGAGACACCGTGATTACTCCCAAtgctctgtttgtttttaatggtgGGAGTTACCCGTGGCTAGTTTGGACAATGATGATTAGgaagaacaaaagtgtgctcactcgaTTGGTTAGAAAGCGTGTAACAGAAAGAGAACAGAGaagtctaaatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatttatatcaCATTCATATCACTTTTCAATAAGCTAATCACAACGTTTCAAATTGCGACTATGATTCAATTTCGAATAATAGCCTTAATACAGTCATGCCAATATTCAAAATAGGGATGCTAAGGATTAATCTGCCAGGAATAtctttttataaaatatgtaaGATATGTTAATGTCTTTAAGCCATGCAtggattaaaatatatttacattagctgtttatttctatatttctttaatatttggaaaatcaataagtattttttttatataatggcaGATTTTATATGAACTCTCAAAACCTATAATGGACTATCCAAGTATAAAAAAGTCAAATGCGGTGATTGCATAATATTTGTAGTATGTAGTCtgtaattaataaagtaaaatgtatttatcttGTCTACTCCAATCTACTAATAAAGCATccttcagggtttctgcaggtcaaatttaagacattttaagaccattatgaatgataTTTTAGACTTATAAAGGGGTAAACCGTAAAGATTTTTTACTTGcccaattaaataaatttaaattgattaatacttaaataatgtgtcaaagcacGCAAATCATACACCCTTTTCTTTGACAggctttaaaaacattattaaactaaatataaaacagtAGGGATGGACGACTCTGGCTAAAAATGTcacaattacaatttttttttttttttttgcttaaaatctaGTTCactattctgtaaatgtaaaataaacgttaatatgattagcctattatcattattaattttcaaacatatggtaaaacaacactaataatattatgcctatgtgtaggtctactgttgcttaaaatgctgaATTTTGTAAAGTCATTATGGTGGCTTTATTGACTGTTAATTCACAGTAGAATGATAacatcagaatataactattcataattataaagttgatttattatatttaagtcatgtgcttgtcatctgttattgacaacattattagaccatttgttttcactggtaaaataagaattttgtcattatcagactccttgcattattgaccttattctaaaatgcggaagtgcgcctgttttcgcgattgtcttagaacttccgattcagtcgcctatgggagaaatgactaggaataataaacggcagaaaatggccaaactacttgctcaacaaacaaatgtttgcttgactacacagaccaagtagcataatataataagaaaatatcaaattgcaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013480 True 1894 lncRNA 0.31 2 21925701 21939965

Neighbor

gene id symbol gene type direction distance location
XLOC_006576 si:dkey-191g9.5 coding downstream 186559 21712284 ~ 21739142 (-)
XLOC_006575 si:dkey-191g9.7 coding downstream 224378 21689267 ~ 21701323 (-)
XLOC_006574 sprn coding downstream 237525 21682770 ~ 21688176 (-)
XLOC_006573 elovl6l coding downstream 253570 21666521 ~ 21672131 (-)
XLOC_006572 mxtx1 coding downstream 265498 21656713 ~ 21660203 (-)
XLOC_006578 BX649385.1 coding upstream 251396 22191361 ~ 22195168 (-)
XLOC_006579 mmrn2a coding upstream 679719 22619684 ~ 22646134 (-)
XLOC_006580 glud1a coding upstream 739119 22679084 ~ 22699024 (-)
XLOC_006581 psda coding upstream 800073 22740038 ~ 22774491 (-)
XLOC_006582 CR550304.1 coding upstream 838095 22778060 ~ 22784433 (-)
XLOC_006471 BX537274.2 misc downstream 11660796 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 21099476 825904 ~ 826225 (-)
XLOC_006570 NA non-coding downstream 778319 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 846290 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 1193813 20729834 ~ 20731888 (-)
XLOC_006567 CU633804.1 non-coding downstream 1378203 20546967 ~ 20547498 (-)
XLOC_006563 AL954359.1 non-coding downstream 1693951 20227045 ~ 20231750 (-)
XLOC_006585 BX530068.1 non-coding upstream 903865 22843830 ~ 22847484 (-)
XLOC_006595 NA non-coding upstream 1272794 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 1468064 23408029 ~ 23411631 (-)

Expression


Co-expression Network