LOC122353196 (zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096)


Basic Information

Item Value
gene id LOC122353196
gene name zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25714102 ~ 25715704 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU9033
CTAAGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCATGATGCctaaattgtaactttttttttggtcgtGGGAAAGCAAAGcggttaatatatttataattatacgCGACTCTGGACCGCAAAAGGAGGGATGTGTTTTCAAACATCGATGTGTGGTCTGTTAGGATGCCGGAGATGCAAAAATCTggatggtgcaaaaaaaaaaaaaaatctatatattgagaaaatcacatttaaaattgtccaaatgaattcttagcaatgcacgttaatcaaaaataaagtagcAAATTTTCAA
>TU9035
CTAAGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCATGATGCctaaattgtaactttttttttggtcgtGGGAAAGCAAAGcggttaatatatttataattatacgCGACTCTGGACCGCAAAAGGAGGGATGTGTTTTCAAACATCGATGTGTGGTCTGTTAGGATGCCGGAGATGCAAAAATCTggatggtgcaaaaaaaaaaaaaaatctatatattgagaaaatcacatttaaaattgtccaaatgaattcttagcaatgcacgttaatcaaaaataaagtagcAAATTTTCAACACATCGTCATGGGACATGAgctttgctttatatatatttttaatgttgccCCTTACAATGTACTGTTGGCTAGAAATATCATTACCACTGGTTTAGAGTCATATATAATGTTTTCCTCTCTTAGGTCGCCCCCATTCAGTCTTTTTTAGGCCAAAAAGGTCGAACAGGCCTGATTTATTACCTTTGGCTCTCAGCATATGATCGACAGCAAAACACTGACTCAGACAACTTTATTAGCTTTAAAGATATAAAGGCAAAGTGAGCACTTCTAGATGTTTAAACGATGACTGCACTACATCTCCTAGCTGGCCGTAGCGGAGGCGTAGACGCTCACAGGACTCGGAGAGGCTGCTGGCTGTAAGAGGAGCGCAGGAAGCGAGGGAACGAGTCTTTAGCCATCAGGGAGAAGATGCGCCGCTGGGCCTGGAGGAAGGTGTCCGCCGCGGGCTCCTCCATCAGCCCCACCAGCGCCTCGCGGGTCTCGCTGTCCAGGTTCACCTGAGAGAGGAAACCGGCAACTTCTCACAAACCATGAGGAAGAAAtcgcttttttttattaaaaaaa
>XM_043251160.1
TGGAGACTTTTATTCTATGTCGTGTCCTAAGTCTCTCTGTTTCCGGTTGCGTTCAAGCGATAGAAAATGGCTCAAGGCAAACAGAAATTTAAAGCGCAACGACCCGGAGGAGCTAAAAAGCAACAACAGAAGCCGAAAGGACCGAAGAAAGGAGGAAGGATCATCGCTCCCAAAAAAGCTCAGGTGGTCCAGCAGCAGAAGCTGAAGAAGGGTTTGGAGGTGGCCATCAGGAACAGGATTGAGCACGAAGTCACGCAGAAGGCCAGCACGTCCCTTCACAAGAAACTGAGCGTGCTGAAGACTCCCGCGGGGAAGAGCGGCGGCGCTGGACCTCCAAAACCCGGACCATCCAAGTCCACCTGACACCAGAACACTGCGGGGCCATGGACCGCCGCTAGAGGGCGCCACCGcgctataaatataaatacgtTCACTACTTTCTGTGATAGgtttatttttagaaacagCAAAATATGGTGTGGAATATGACGTATGTGATCTTTTAGACTGTGCttatatttatgcaataaaaCGAGAGAGCATCGTTAGCTTTCA

Function

symbol description
zgc:136864 Orthologous to human C19orf53 (chromosome 19 open reading frame 53).

NR:

description
UPF0390 protein zgc136864

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU9033 False 791 TUCP 0.44 3 25714668 25715678
TU9035 True 1357 TUCP 0.45 3 25714102 25715678
XM_043251160.1 False 555 mRNA 0.49 3 25714930 25715704

Neighbor

gene id symbol gene type direction distance location
LOC122353232 rnf150a,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC107729769,LOC107700883 coding downstream 128 25706824 ~ 25713974 (-)
LOC122349099 LOC107700791,LOC107729560,LOC107598497,LOC107729568,LOC107706374,LOC107595808,LOC107687795 coding downstream 12818 25687797 ~ 25701284 (-)
junba junba,LOC107594404,LOC107757044,LOC107747424,LOC107684248,LOC107675464 coding downstream 135303 25577222 ~ 25578799 (-)
rnaseh2a rnaseh2a,LOC107747423,LOC107594406,LOC107676270,LOC107757040,LOC107583201 coding downstream 145191 25564387 ~ 25568911 (-)
snrpb2 snrpb2,LOC107684252,LOC107676294 coding downstream 150247 25561561 ~ 25563855 (-)
LOC122353214 vps54,LOC107700845,LOC107598476,LOC107709616 coding upstream 454 25716158 ~ 25727538 (-)
aptx aptx,LOC107757069,LOC107746089 coding upstream 94175 25809879 ~ 25813849 (-)
il15 LOC107730128 coding upstream 353472 26069176 ~ 26076862 (-)
znf330 znf330,LOC107746098 coding upstream 361561 26077265 ~ 26083184 (-)
elmod2 elmod2 coding upstream 420002 26135706 ~ 26141269 (-)
G6201 NA non-coding downstream 92357 25621434 ~ 25621745 (-)
G6200 NA non-coding downstream 93598 25620246 ~ 25620504 (-)
G6165 NA non-coding downstream 209248 25503940 ~ 25504854 (-)
G6118 NA non-coding downstream 286166 25283375 ~ 25427936 (-)
G6132 NA non-coding downstream 327526 25386177 ~ 25386576 (-)
G6223 NA non-coding upstream 21093 25736797 ~ 25737312 (-)
G6594 NA non-coding upstream 53203 25768907 ~ 25799273 (-)
G6634 NA non-coding upstream 120234 25835938 ~ 25844994 (-)
G6636 NA non-coding upstream 123147 25838851 ~ 25846530 (-)
G6650 NA non-coding upstream 202866 25918570 ~ 25918785 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 157120 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 311747 25400384 ~ 25402355 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other downstream 314085 25398491 ~ 25400017 (-)
G6124 actr2,LOC108423375 other downstream 406131 25304597 ~ 25307971 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 579943 25132003 ~ 25134159 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other upstream 115620 25831324 ~ 25863787 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other upstream 415084 26130788 ~ 26135486 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 701155 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 738546 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 1086206 26801910 ~ 26802954 (-)

Expression


Co-expression Network