XLOC_006579 (mmrn2a)


Basic Information

Item Value
gene id XLOC_006579
gene name mmrn2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 22619684 ~ 22646134 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012712
ATACGCCAGCACTGAGCAACGGATTTACAACCACTTGTTGTCCTGGTGCTTTGTGCCAGTTGATGTGCGTTTTAAGGAGCACACAGATATGGTGGTGCTAAAGTTGTCTGTTCTTCTTCAGGGGCTGCTGCTCGTTGCCCGATGTGAGGTCCGAGCTAGAGACCCTGAGGTGGAGGATGAGGATGAGCTGAAGGATATGTCGGATGGTGGCGGATGGGACCCCAGAGTTCCATTGATTGGCTTTGGGGCAGCTCGTCATGGTGAAGTGATCAACAGAAAGAGACCTGACGTGTACGGAGCTCTTCATCATCCTGTTGGTCATCATGGACATCATGATCACGGTCACCAGGATGTGCCTGAGGGAACAGTGGACCCATCGTCAGCCACTGAGACCACAGGCTCTTTTCAGCGCACTGGGAATTGGTGTGCGTTTGTTCACAAGCAGGCTGTGACTGTGGCTGTAGCCTGTGGAACAGAGAAATACACCATCAAGTCCCAGAGTCCCTGTCCTAATGGCACCCCAGACTGTCAAGTCATCATGTACAAGCTGTCCACTCGGCCGGTGTACAGACAAAAGCAGAGAATCAACACTGCGCTGCAATGGCGATGCTGTCCTGGGCATTCTGGGGCAAACTGTGATGAGACAGTCACAGATGGACACATCTCTCAGTCTGAGACTGAAGACCCATCTCAGGCAGGCAGACCACATCCAGGAGGACCTGAAGAGACAGACAGACGATTTAACAATCTAACTCCGGAAAACAGAGAGCAGAATGATTACCAAACGTTTGGAGGTCTAATGTATGAAGCTCAGCAACCTGATGTGGAGAATCAAACTGGACCGTCCATAGAGGATTATGAGCATATCCCTCCTGCTGGTCAAGAAAACCATAACAAACATCACTTTGAGAGGAGAGATCCTTATGCTGTAAGTGAAGGTGTTCCTTACCCTGAAACACCTTACCTTCATGATAGGCTCTTGCTGGCCTTGAAAGAGGCTGTGGTGTCTCAGCTGCAGCCTGTGTTGGAGAACTTCAATCTAACCTTGGAGCGGCTCTCTCAGGAGGTGCAGGGTTTGCAGCGGGACATGGCCCATCTTCGTCATGATCAGGGGCAGGGAAGGATCACTGAGCCTCAGGAAATCGGTGGTGAGGATCACAATTCACAGGAGGCTGTTGAGGCAGAGTTGAGAGAAAGTTTATTGAAGCTGGAGGAGGTGAAAGCTGAATTTCACAACCACCGCAATGAGGTCGAAGCAAGGCTTCATGCACAACAAACCATGCTGCACTACAACCTGACGAATTTCAAGACAGACATGGACGTTAAAATCAAACGCAACCAAAAGATGTTACAGGTCAATCTCCAATCGCTCAACACATCCATGTCTGAAGTGAGGCAGGAGCAAGAGAGGCTGGACGAGGAGCTTCAGAAGATTTGGCCTGAAAAGAGGACAGATCCCACTGAGAGCCAGAGTCATGTAAGCACTGCTGTCTGGGAGGCCATTACACGTCTAGACAACAAAGTTGTCAACAACACAGTGAGACTTAGTGCCTTGATTGAAGAACAAGAACAAGTGACCGAAAACATCAGGGGCCTTCATAATGGTTGGAAAGATCTGAATGATAAAATAGTCCAGACTGGCCGTAACAGTCAGGTTCAGTTTATGGAGACCGGTTTGGAGGTGGAGGCAGCCAAGGTCAGAGTCCTTGATCGTATTGATGAGCTGAGCAGCAATATTAGTGTTATCCAGAGTGCCCTGCAGGATGTGGAGACTGATGTCGACAACATTTATAtcgatttttacaaaaatataagtTCAGCAAGTGGAGAATGTGACTGCATTGCTCTTGGAGCAACTGTGACCCATTTGGAACAAACTGTAGCTGATGTGATGAAGAcagtaaatgaaaatattttagcacaggaaATGATGGCCAATCGACACAATAGGGCATGGGTACCATCTGTGGAAGATCTCAAATTAGGCCTACTGAATGTGCAAAATTCCCTTGCTTTTCAGCAGGAAAAGAGCAGAACGTTACAACACAATGTGACCCAGGCACTTGCCTCTCTCCTGGGCAGCCAGCAGGACATTGAAATGCTCCAGAAGCAGGACAGGGCCAAGGTTGAGAAGATCAAGCAGCTAGAGGGCACTTTCAACACCTTGCTTCAGGATGCCACTCGTCACTCAGATGTACTGGAAATTTTGCTTGGGGAAGAGGTGCTGGAGTTCACAAAGTGGTCTCAACAGGACAAGAGACGTTTCTCAATACCGCAGCTGGATGAAAGAATGAAAGACATGCAAAAGCAGATTAATGGACACAGCCTAAGTCTAGCCTCAATGCTGAATGCTGCTACCCCTCAGGTAACAGCAGCAGATGAGCCCTCACTGCTTGCAGACTGGGCTTCGACAGGAACCAAAAGGAAACGTGAGGATGCCCGATTTGACCTCTCAGAGGAGCTCCCGGAGTACTCCGATGATGACTTCTGGACCTTGGAGAAAACGGTAAAAGAGCTTGAAGCGCATATCAAACGCCTTGAGGATCATCGTTGTCCAACTTGCTGCAACTGCACTAAGACTGCTGCCAGCAGTGGTGTAGAGGTGAAGCTGCAAACTGAGCTGGATACTTTGCGCAAGGACCTCGAGACCCATGTTGgagtttttaaaagcattttcagTAACACAGAGGGACTTGCTGCCTCTGAGGTATCCGTGGACTTGGATAAATTGTCAACTTTAATGAAGAGAAAGGAAGTAAAGCATCAAAAGAAACAGAAGAAAGCAGACAAAAGACTTTTTCAGACAGGGGAAAAAGTGGATCTCCGCAGCAAGAGGGATGCATCACTGGAGTCTGCAGTGCTTCGTCAACTCCCAGACAGTCCAGTGATGTTCCTGGCCAGTAGTAATGAAGGTGCAAACGGATCAGGCACAGTGCTTTTTGAAAGCGTGGCTCTAAATCATGGTCAGTTGTACTCACCGAAAACAGGTGCTTTTCGTGCCCCGACATCCGGCGTCTACCTCTTTGTGGTGACACTGGACTTTGGATCAGGCCTCTCTCTGGCTCAGTTAAAGAGAGGTGAAGAGGTAGTGGCCTCCATGCGGCAGAACCCGAGGAAGTTGGGAGCACCTGCAACACGCGTCATCATTCTGGAAATGGAGCAAGGAGAGGAACTCCGCCTAGAGCTGGTGCAGGGAACTATAGAGCGCAACAACCCACAAGATAACACATTTGCTGGTCTCTTAATGCTGCAGACAACCTGAGAACTCAAAGCATTCTAATGtgcaaaaaatgtgcaaaaaaaactgaaagatgGCAAATTACTTCCGCCTGTTTTTGCAGTGCTCACCACTTAAAACTTCTCTTTCGATATCTGAGAGACTAAAATAACAGCTTATGATTGCAACAGGTTATTGAGCCATTGGGCACTGTTTGTAACGAGTGAGATTTGGGTGCGTTTACATGACAAAACTGCCAACAGCTGGCCTGGCACATACACTCcagtttttagtttattcattaatCCAAATGAATGAGAATACTTTTGACAGTTATCATCCCTGCATAAAATGTTTCCATTTTTAgtatattgtcattttaaaatagactttaaaatatttatattttcagtttATACCAAAGAAAGACAAGACacgtcaaaaacacaaaacattagtgtattaaaattatattttgtaaaagctTACATGGACAAATAGTATACAGAGTTAGAGGCCTACTCGAAAGCCACACTTTCAAAATGGggctaaataaaaaca
>TCONS_00012713
ATACGCCAGCACTGAGCAACGGATTTACAACCACTTGTTGTCCTGGTGCTTTGTGCCAGTTGATGTGCGTTTTAAGGAGCACACAGATATGGTGGTGCTAAAGTTGTCTGTTCTTCTTCAGGGGCTGCTGCTCGTTGCCCGATGTGAGGTCCGAGCTAGAGACCCTGAGGTGGAGGATGAGGATGAGCTGAAGGATATGTCGGATGGTGGCGGATGGGACCCCAGAGTTCCATTGATTGGCTTTGGGGCAGCTCGTCATGGTGAAGTGATCAACAGAAAGAGACCTGACGTGTACGGAGCTCTTCATCATCCTGTTGGTCATCATGGACATCATGATCACGGTCACCAGGATGTGCCTGAGGGAACAGTGGACCCATCGTCAGCCACTGAGACCACAGGCTCTTTTCAGCGCACTGGGAATTGGTGTGCGTTTGTTCACAAGCAGGCTGTGACTGTGGCTGTAGCCTGTGGAACAGAGAAATACACCATCAAGTCCCAGAGTCCCTGTCCTAATGGCACCCCAGACTGTCAAGTCATCATGTACAAGCTGTCCACTCGGCCGGTGTACAGACAAAAGCAGAGAATCAACACTGCGCTGCAATGGCGATGCTGTCCTGGGCATTCTGGGGCAAACTGTGATGAGACAGTCACAGATGGACACATCTCTCAGTCTGAGACTGAAGACCCATCTCAGGCAGGCAGACCACATCCAGGAGGACCTGAAGAGACAGACAGACGTATGTGATACAAAACCTCTTTAAACTTTATATAAATTAAAGGTCTCATTTTTGCTAATGAATTGTGTAACAAGGGTGGCACATtggctc

Function

symbol description
mmrn2a Is expressed in cardiovascular system; fin bud; floor plate; gut; and presumptive neural retina. Orthologous to human MMRN2 (multimerin 2).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080424-3 Is expressed in cardiovascular system; fin bud; floor plate; gut; and presumptive neural retina. Orthologous to human MMRN2 (multimerin 2).

Ensembl:

ensembl_id ENSDARG00000076135

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012712 False 3778 mRNA 0.47 8 22619684 22646134
TCONS_00012713 True 827 lncRNA 0.51 4 22631217 22646134

Neighbor

gene id symbol gene type direction distance location
XLOC_006578 BX649385.1 coding downstream 424516 22191361 ~ 22195168 (-)
XLOC_006577 NA coding downstream 679719 21925701 ~ 21939965 (-)
XLOC_006576 si:dkey-191g9.5 coding downstream 880542 21712284 ~ 21739142 (-)
XLOC_006575 si:dkey-191g9.7 coding downstream 918361 21689267 ~ 21701323 (-)
XLOC_006574 sprn coding downstream 931508 21682770 ~ 21688176 (-)
XLOC_006580 glud1a coding upstream 32950 22679084 ~ 22699024 (-)
XLOC_006581 psda coding upstream 93904 22740038 ~ 22774491 (-)
XLOC_006582 CR550304.1 coding upstream 131926 22778060 ~ 22784433 (-)
XLOC_006583 si:ch211-1n9.6 coding upstream 173351 22819485 ~ 22819667 (-)
XLOC_006584 pbld coding upstream 193687 22839821 ~ 22843805 (-)
XLOC_006471 BX537274.2 misc downstream 12354779 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 21793459 825904 ~ 826225 (-)
XLOC_006570 NA non-coding downstream 1472302 21146114 ~ 21147382 (-)
XLOC_006569 NA non-coding downstream 1540273 21076652 ~ 21079411 (-)
XLOC_006568 NA non-coding downstream 1887796 20729834 ~ 20731888 (-)
XLOC_006585 BX530068.1 non-coding upstream 197696 22843830 ~ 22847484 (-)
XLOC_006595 NA non-coding upstream 566625 23212759 ~ 23217818 (-)
XLOC_006597 NA non-coding upstream 761895 23408029 ~ 23411631 (-)
XLOC_006602 AL772289.1 non-coding upstream 1315158 23961292 ~ 23961406 (-)

Expression


Co-expression Network