taf5l (taf5l,LOC107703828,LOC107700873,LOC107580738)


Basic Information

Item Value
gene id taf5l
gene name taf5l,LOC107703828,LOC107700873,LOC107580738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26348591 ~ 26354198 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219955.1
CGGAGGAGTAGAGAAGAAGAGAGCGCGACCAATGGAGCAGCGGCGGGGAGCAGCAGTCTTCTCCTGAGCTCATCTTCCATGGCTTAAACCCGCACTTTTCTTTAGGACCGTCACATACGGATAATGCAGAGATGAAGCGCGTGCGGACGGAGCAGATCCAGTATGCGGTGACCCAGTACCTGAAGAGGAGACAGTACATAGACACAGATGCGTCTCTGAAGGGGGTCAAACTCTCCCAGTCTGCCGAGGAGATGGCGGCCAGTCTGACAGTTCAGACAGAGTCCAGCTGTGCGAATGTGGTGTCTTCGGCCCCGTGTCAGTCCGACCCGCAGCAGTACGAGACCCAGTTCTCCAGACTGCGCTCCTTCCTGCAGGaCGCAGAAGCGCCGGTGGTGAAGGAGGTGAGCGGCGTCTTGTTCCCGCTCTTCCTCTACCTGCACCTGGACATGGCTCGCTGCGGCCTGAAGGGAGCGCTAGACTCGTTCTACAGCCGCTTCCACTCCTCCTTCCAGCAGGACCCCGAGCAGAAAGCCATCGTAGACCTGCTGCGGGGAGCTGTCACGCCTCAGGATGTGACCTCAAACCCTAAACTCTGCTCGCTCCTGGATCACAAGTACGTGGTGCACCTGACGGATCAAGCATACAGCTACCTGCTGCGTTACCTGCAGAGTGACGACAACAGCGCCGTCTGCTGGGCGCTCAGCACACACGTGCAGGTGGAGGTGACGGCGGCACGCAGGACTGACTACCAGCTGTACGGCGCGGGGACCGGAGCGGGGAACGCGAGCtccgcttcctcttcctccgCGGAGGGGGCGGAGCGCGCGGAGGTCACGGCCGGGTTACCTCAGAACGAGGCGGCGCTGGAGGCGCTGCAGGACTGCATCAAGCGCGTGAGGGAAGGAGCGCCTTCGCTCACCACCGTCTGCTTCTACGCCTTCCAGCACACGGATCAGCTGCTGAACACGGCCGAGGTGTCGCCGGACAGCCGTCTGCTGGCGGCCGGCTTCGACAACTCCGCTGTCAAGCTGTGGAGTCTGCGGGCCAGGAAGCTGAAGGCGGGACCTCACAGGACCGACGTGTCCAAAATAAGACTGGCCTGTGAcgtgctggaggaggagGCGGACGACGAAGACGCCTCGGGCAGCGAGATAAAGACCCTGCGGGCTCACAGCGGCCCCGTGTACCGCACGGCGTTCCTGACGGACGGCTCGGGCCTGCTGTCCTGTTCGGAGGACTCCACGGTGCGCCTTTGGGACCTGAGCAGCTTCACCAACACCGTGCTGTACCGCGGCCACGCCTACCCCGTCTGGGACGTGGACGTCAGTCCCTGCGGCCTCTACTTCTGCACGGCGTCCCACGACCGCACCGCGCGCCTCTGGAGCTTCGCCCGCACCTACCCGCTGCGCCTGTACGCCGGGCACCTCTCCGACGTCGACTGCGTCGCGTTCCACCCCAACTCCAACTACGTGGCCACCGGCTCCACCGATAAAACGGTGCGGCTGTGGAGCACGCAGCAGGGGGCGTCCGTGAGGCTGTTCACGGGCCACCGCGGGCCGGTGCTGTCGCTCGCCTTCTCGCCCAACGGCAAGTACCTGGCCTCGGCCGGAGAGGACCAGAGGCTGAAGCTGTGGGACCTGGCGTCCGGGAGCCTGTTCAAGGACCTGCGGGGGCACAGCGACAGCATCACCAGCCTCTCCTTCAGTCAGGACAGCAGTCTGGTGGCGTCCGCCTCCATGGACAACTCGGTGCGGGTGTGGGACATCCGCAGCGCCCACGGCGGCGCCCCCAGCGACGGCTCCAGCAGCGAGCTGATCGGACAGTACACGGGCAGCACCAACAACGTCCTCAACGTGCAGTTCATGGCCTGCAACCTGCTGCTGGTGACGGGCACGGCGCTGGAGAAACAGGAGCAGTGAGAGCGGGCGGGGGTCACGGGAAAACACGCCCCGGGTCGTATTTCACGCCAAAATCTGGACGGTTGGAATGCGTAGGGTGACCTCGAGGACCAAATCTGTCACAGTTTCTGTGAATTCGCTCGACAAATAAAACGGAGCCGTTTAGCGTCGTTATTTTGTGGCATGGTGACATCGCCCAGATTTCACCCCACAGGGGTTAATAGTTAGGGTTAATTAGTTAATAGTAATCTCAAAGACAAAACGTGTTCTAATTAAAGCCATTTAgccatttattcttttttttttttgtattgtgacGTTAATTTAATGATAAACCTATACCCAAGGTTTTTTCGATAAAAATTATTTGGCTAAAATGGCGTAAAACCGAATTAATGCTGCACAAATGGCAAAGGTAGTTCGTCAAATATTATACATTCATAATcgacagtatttttattttattaaaggaaaGACGGCAAGCGCTACCTTGATTTTCACCATCATTATCATTGTTTGCGTTACAATAAATTTGGGGGGCTGTTGTCATAAAAATAacgtatatgtattttaataggCTTTATTTTCTTCGAGCGAAACGTATTTCTAGAATTATTTTGGTGAAATACGACCAGGTCACGTGCTTCCAGGCCGATTTCTCGTGAGACTCACCTCTGTGGTGTTTCGTAAAGCGAGAGTGTTGGCGTTTTGGTTCGTTACTGTTACGGTGTGTGTGTCAATGCCTGCTGttttcatgaaaatgtaaatactagacatatttttctgaaaaaagttatttgcgTGTCTGTATTTTCAGTTGAGCTCGTTTCTGTTTGTAAAAGCGAGCACGTCCGGCACCGTTCTCCAGGAAGCCCGATGGACTGGATCAAGCGGTCATCTTCCTAGTTCTTATTCCCACCTTCACTAGGGATTGAGTTTAGTATTAttgcaacaagaaaaaaaaaatactttagatGCCACGGTTTGGATGGACTGAATGATTGAATGATGACTCTTTGTGTTCCTAGTTGCTAATCACGACGCGTTTGTCTTCAAAAGTGAATAGGAAAAAGTTTTTGCACCGCTCTGAtacttgtaaatatatttttgtaacatttca

Function

symbol description
taf5l Predicted to enable transcription coactivator activity. Predicted to be involved in histone acetylation and regulation of transcription, DNA-templated. Predicted to be part of histone acetyltransferase complex. Orthologous to human TAF5L (TATA-box binding protein associated factor 5 like).

NR:

description
PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219955.1 True 3018 mRNA 0.55 7 26348591 26354198

Neighbor

gene id symbol gene type direction distance location
capn9 capn9,LOC107729683,LOC107598506,LOC107700872,LOC107746105,LOC107594336,LOC107703830 coding downstream 95 26340724 ~ 26348496 (-)
ltv1 ltv1,LOC107746106,LOC107700874,LOC107729687 coding downstream 8334 26334613 ~ 26340257 (-)
LOC122353257 NA coding downstream 32902 26313205 ~ 26315689 (-)
akt3b akt3b,LOC107594289,LOC107703832,LOC107729704,LOC101071975,LOC108259077,LOC108438606,LOC101174244 coding downstream 64848 26271910 ~ 26283743 (-)
cct4 cct4,LOC107700877 coding downstream 86976 26256237 ~ 26261615 (-)
si:ch211-133l11.10 si:ch211-133l11.10,LOC107594285,LOC107746109,LOC107703823 coding upstream 25919 26380117 ~ 26383692 (-)
rfx1b LOC107703707,LOC107746111,LOC107594279,LOC107729889 coding upstream 72473 26426671 ~ 26440524 (-)
nthl1 nthl1 coding upstream 122454 26476652 ~ 26481563 (-)
pkd1a pkd1,LOC107729871,LOC107700794,LOC107598528 coding upstream 172692 26526890 ~ 26606252 (-)
wu:fj19g03 NA coding upstream 284986 26639184 ~ 26643244 (-)
G6596 NA non-coding downstream 158081 26189058 ~ 26190510 (-)
G6670 NA non-coding downstream 252334 26092009 ~ 26096257 (-)
G6687 NA non-coding downstream 282405 26064559 ~ 26066186 (-)
G6652 NA non-coding downstream 409740 25938421 ~ 25938851 (-)
G6650 NA non-coding downstream 429806 25918570 ~ 25918785 (-)
G6741 NA non-coding upstream 9474 26363672 ~ 26367603 (-)
G6747 LOC103457336,LOC103359577 non-coding upstream 14752 26368950 ~ 26369519 (-)
G6749 LOC107729639,LOC107598502,LOC107700871,LOC107736507,LOC107703825,LOC107594284 non-coding upstream 19464 26373662 ~ 26374623 (-)
G6769 NA non-coding upstream 90699 26444897 ~ 26446738 (-)
G6799 NA non-coding upstream 158194 26512392 ~ 26512958 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 213105 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 484804 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 632887 25714102 ~ 25715704 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 791609 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 946236 25400384 ~ 25402355 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 62661 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 100052 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 447712 26801910 ~ 26802954 (-)
si:ch211-286b5.5 NA other upstream 563471 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 630346 26984544 ~ 26992582 (-)

Expression


Co-expression Network