LOC122325105 (slc27a1b,LOC107662711)


Basic Information

Item Value
gene id LOC122325105
gene name slc27a1b,LOC107662711
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 28899713 ~ 28913858 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220034.1
GAGAGTTTTAGCACAGACTGCTTTTTATCTTCAAAAAGCATAAGAGGCGCTTCACTAGAAGCCGTTTCCTAAAATGGAGCTGAAGTGGGCGCTTCTTTTTGGTCAGGATGGATTATTACAGTCTGTTTGCCCGAATGTGCCCACGTGAGAAGAAATCTGAGCACACAACCAGTACCAGTCCGACCAGCAGCAGTCGGAAACCTCTTCGGAGCGACGGCAGCTCGGCAGAGTCTCAGATGTAAAGCAGATCTTAAACTCTTCAACACTATCCACACTGTCCTTTCCGTGTCAAATGAAGACTTTTCACAAGCTTTAATTCAACATTTACATATGCATCATCTATCACTGGAGACGGAGATATAGGCTTGACTTTGGACCCAAGAGAGCTGCTTCtgtttgacctttttttaattacgccaaaggaaacatttatattttgttgagATTAGTTTGACtgtcaattaattatttttaaccatGTCAAAACATCCTAATTTTCAGCTCAGgagtatttctgtgtattttcacGCGCTTAGCCTTCGTTATACAGGAATGACTGTAACAACCAAAAGTGACATGTCTGTTCACGTTATATTGCGTTACATTGGTGaagattattttatatgcaatttttgGGCGTATATGCATTAAGAATCATCATGCCATTCAAGCAAATCTGGctcaaaattgtatttattaatgaactGTGTGCGTGTTCTCTTTGTGCATATCGTCACTGTATTAGATGAGGAAACTGTTAAGAGCAGGAAGTGCTGGAAAGTGGACATGTTGAGTCACACGGAGCAGGAGCAGACACATGAAGAGGAAACTCaatggaaaataaacatttcacaacaaatgcaaatgagacGGACAGAGCGCCTCTGAATAAGCTCTGAGGAGTGATTGGAATACAAATCTAATTTGGGTTGGTTTCCTAATAATGGAAATATCTCTCTGAAAGGACAAAAGGCTCTTTGGCGTGTTGTGCCTCCCTCATCAGACAGGACAGAGTACTGCTAGAACATCAAGAGAACTAAAGAAATAGTCCAATAACACTCAAAACTGGTTTCCATTACTCTATAGACTGACTGCTTTACTGCACATCTCACAATAAATGATTGAAAACTAAGAATCTCTGGAATTAAAAATAGCCGTACTGGACTTAGAACATGTTTATACAGTCCTTCAATGTTCTTGAAAGATAGGGCTTCATTGCAGCGTCGAAGAGGGTgtgaatatatttcagtaatattgCCTAATCAAAAAGCTGGAAACTATTCAGTCAATGAGACTGTTTCCCAGATTGAAGTCGTTGCGTGGTGTCTCGTAGTTTCTCTGAAGCTCGAGTTCTGACAGGACCCCAGAACAAGCCAGTCCGGACACGCAGAACCAGGAGAACCTGCAGACGCGTCTCTGACAGCCGCGTCCTCCAATCGGAGCGCCACGCGTCAGCGCGTCCTCCAATCGGAGCGGAGCGGAGGCGGGGCTTCCAGGCCGAGGAGTGAGAGTCGGCGAGAATCAATAAATCGCGTCGCGTTCCTCGGCGAGCTCTCGTCAGGTCTGTGAAGGGCCAGCTTTCAGCGTTTCTCTGGGATTATTCTGTTATCAAAGGATTGAACGGGCTCCTCGAGAGACGCGCAGGATGAGAGCTGGAGACGGGTTTGCTGCGCCGGTGGCGGTCATCTCCGCGGGGTTACTGAGCGTCCTGGGCCTCCCGTGGTTCTGGACTCTGTCGGCTCTTCTAGGAGTGTATCTATGCTCTGGAGGATGGAGGTTTCTCTATGTGGCGGCTTACACCTTCAAGAGAGACCTTGTAGGTCTGCAGGTGCTGCTGCGGGTCAAGTTCTCCATGCGCCGCTTCATCCGCTCACGCAGCACCGTGCCGTCTATATTCGCCCAGCGGGTGGCGCTGCACCCGGACAAGGCGGCGCTGGTGGAGGAGTCGACGGGCGAGGTGTGGAGCTTCTCGGAGCTGGACCGGCGCTCGAACGCCGTGGCGCAGTGGGCCTCGGCGCAGGGCTGGAGCTCAGGAGACGTGGTGGCCGTCTTCATGGAGAGCCGGCCGCTCATGGTGGCGCTGTGGCTGGGACTCGCCAAAGTGGGCGTGGAGCCGGCGCTCATCAACTTCAACCTGCGACGCCATTCGCTGATGCACTGCGTGGGCGTGTCCGGAGCGAGGGGGATGGTGTTCGGGGCGGAGCTTCTGGACGcGGTGCTGGAGGTGAAGGAGTCTCttggatctctctctctcttctgcacCGGCTCAGCTCCGTCCGAGTCTTTGGGTTCTCTGTCGGCTCTGGATCTGGACGATCTTCTGTCTTCGTCTCCTGACACGCCGCCCGCCGTCACACACAACAAGGGCTTCAACGACAGGTTATTTTACATCTACACCTCAGGAACAACAGGGTTACCTAAAGCTGCCATCATAGTTCACAGCAGgtACTATCGCATCGCTGCGTTTGGATATTACTCCTTCGGTCTGCGGCCGGATGACGTTGTCTACTGCTGTCTGCCTCTGTATCACTCCGCAGGTAACATTGTGGGCGTGGGTCAGTGTCTGCTGCACGGTCTGACCGTGGTCATCCGCAGGAAGTTCTCCGCCAGCCGATTCTGGGACGACTGCATCAAGTACAACTGCACGGTGGTGCAGTACATCGGGGAGATCTGTCGTTATCTGTTATCTCAGCCGGGCCGCCCGTCCGAGTCTCGTCACCAGGTGCGTGTTGCTATGGGCAACGGTCTGCGGCCCAACGTCTGGGAAGCGTTTATGAAGCGTTTTAACATCAGTCGCATCGGCGAGTTTTACGGCGCCACCGAGTGCAACTGCAGCCTCGCCAACATGGAcaacaagGTGGGGTCGTGCGGCTTCAACAGCGTGATCCTGCCCAGCGTTTATCCCATCAGACTGCTGAGAGCAGACGAGGACACCATGGAGTTAGTACGGGACAGTCGAGGGGGCTGTGTTCCGTGCTCTTCAGGGGAACCAGGGATCATCGTTGGCCGAATCAATCCTCAGGATCCATTGCGTCGTTTTGATGGCTACGCCAATCAAGAGGCCACCAGCAAAAAGATCGCTcacaatgttttcaaaaaggGCGACTCGGCGTATGTGTCGGGTGATCTGATGGTGATGGACGAGTTCGGTTACGTGTATTTCCGGGACCGAGGCGGAGACACGTTCCGCTGGCGAGGAGAGAACGTCTCCACCACCGAGGTGGAAGGAATCCTGAGCGCTCTGCTGAATCAGACGGACGTGGCCGTCTACGGTGCCTCAGTGCCAGGTGAGGAGATACTTTAACCCCTCCTCAAGTGTGGAGGGAAGGCAGGAATGGCCGCTATAGCGGACGTCACGAATGACTTCAACTGTGAGACGTTTCTCAGAGACGTGCAGAATGCTCTTCCTTCGTACGCTCGCCCCGTCTTCCTACGACTTTCACCGGAGGTCGACAAAACAGGCACATTTAAAATCCAGAAGACTCGCTTACAGAAAGAGGGGTTCGACCCACGGCTGACCAGCGACCGGCTCTTCTTTCTCAACAGCCGATCGGGGCGATACGAGAGTCTGACCGAGGAGCTCCACAGCGCCATCATGCAGGGAAAAGTGTCGTTATAAGAAGTCTATTTTCTATAAGAAGCTATAAGTCGTCTTACTGTGTACATTTCATAGTTAATATTGAATAATCTGTACATTGTTTATTTGACCAAATCAGCTAGATAACTGGACTACGATCAAGTACTTCCTGGAGGTAGTGCTCCACACCACTAGTTGTGCCCTTCACATTGTTTGATAGTAGAAAATGTACCATATTCAGTTACAGCACATCagcaaattcattttatttttacaagccTTGGATAGGTTAGAGATGTTTGATTGGAAATACTGGACttacattttctgatttttAATTGAACTAAACACAAAGGTGCTTTGGCGAGGTAAATACACTACTGTAAAGGATGAGTCAGGGAATCAGTGTCAGCCAGAAGAGGTTCTTCACATTCTGCTGCGGTTAGATTTCTCCAGGTATTACTGACTTACGGCACCTTTAATGCGTTTAACACTGTGATGCTGAGACGTCTCTGCGATTTCAGCcttttaatatacacatatattcacTTCTGACCGGTAACAGTAATGGTATTACAGATatccaaaacatttaattgtaaaatgtacaatttcaaCGTTAAAAGCAACAGCTTTGCTTTGATAAACTAGTGTTTATTGATGGAAAATGTTTTGACGTGTGATTTTAACCATTAGCAAACCAGACTGCTTATCCTTTTCAGATGTTTTGGCTATTTTACCTTGAATTGcgaaacaattttaataaatttaactCAACAATTTTA

Function

symbol description
slc27a1b Predicted to enable fatty acid transmembrane transporter activity; long-chain fatty acid transporter activity; and long-chain fatty acid-CoA ligase activity. Predicted to be involved in several processes, including glycerophospholipid biosynthetic process; lipid transport; and regulation of phosphate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Predicted to colocalize with mitochondrial inner membrane. Orthologous to human SLC27A1 (solute carrier family 27 member 1).

NR:

description
PREDICTED: long-chain fatty acid transport protein 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K08745 SLC27A1_4, FATP1_4; solute carrier family 27 (fatty acid transporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220034.1 True 4362 mRNA 0.49 15 28899713 28913858

Neighbor

gene id symbol gene type direction distance location
LOC122349524 LOC107572981 coding downstream 978 28893141 ~ 28898735 (-)
LOC122355940 NA coding downstream 58178 28809212 ~ 28841535 (-)
LOC122362864 LOC107739961,LOC107574374,LOC107742984,LOC107717634,LOC107574376,LOC107725412,LOC107724128,LOC107576777 coding downstream 222888 28674433 ~ 28676825 (-)
LOC122356533 LOC107571418 coding downstream 236467 28654009 ~ 28663246 (-)
LOC122356692 si:dkey-222h21.3,LOC107659785,LOC107571418,LOC107576777 coding downstream 247530 28645661 ~ 28652183 (-)
LOC122358117 LOC107571122,LOC107675016,LOC107709529,LOC107560588 coding upstream 1140 28914998 ~ 28924504 (-)
LOC122359935 LOC107709532,LOC107571128,LOC107674943,LOC107662715,LOC107719079,LOC107560584 coding upstream 10758 28924616 ~ 28928580 (-)
LOC122357989 LOC107571123,LOC107709529 coding upstream 15845 28929703 ~ 28941914 (-)
LOC122360916 LOC107668674,LOC107571136 coding upstream 42449 28956307 ~ 28961850 (-)
LOC122323133 LOC107571137,LOC107668677,LOC107662732,LOC107560590,LOC107719145,LOC107742532,LOC107560573 coding upstream 123864 29037722 ~ 29043291 (-)
G7541 LOC107575099,LOC107576344,LOC107574587,LOC107576324 non-coding downstream 92007 28743444 ~ 28807706 (-)
G7551 NA non-coding downstream 98048 28792644 ~ 28801665 (-)
G7550 si:dkey-222h21.2,si:ch211-114l13.4,si:ch211-236p5.3,LOC107729025,LOC107575333,LOC107574376,LOC107575359,LOC107659785,LOC107576777,LOC107575507 non-coding downstream 98857 28790466 ~ 28800856 (-)
G7547 NA non-coding downstream 125547 28773354 ~ 28774166 (-)
G7535 NA non-coding downstream 227079 28670921 ~ 28672634 (-)
G7579 NA non-coding upstream 58036 28971894 ~ 28981118 (-)
G7591 NA non-coding upstream 101807 29015665 ~ 29017156 (-)
G7575 NA non-coding upstream 201638 29115496 ~ 29124052 (-)
G7574 NA non-coding upstream 242986 29156844 ~ 29158718 (-)
G7620 NA non-coding upstream 376903 29290761 ~ 29291343 (-)
G7527 LOC107575698,LOC107577169,LOC107575696 other downstream 374162 28523705 ~ 28525551 (-)
G7515 slc27a1b,slc27a1,LOC107662711,LOC107560569,LOC107739969,LOC108413363 other downstream 453122 28406182 ~ 28446591 (-)
G7508 LOC107739967,LOC107747700,LOC107716241,LOC107572978 other downstream 507660 28391039 ~ 28392053 (-)
G7475 NA other downstream 651190 28244128 ~ 28248523 (-)
nxnl1 nxnl1,LOC107748002,LOC107713785,LOC107571423,LOC107659782,LOC107690637 other downstream 676466 28220899 ~ 28223247 (-)
LOC122324333 NA other upstream 29130 28942988 ~ 28944618 (-)
G7563 ubl5,pin1,LOC107727173,LOC107685032,LOC107571794,LOC107662743 other upstream 135885 29049743 ~ 29132092 (-)
LOC122362981 LOC107662727,LOC107560596,LOC107685031,LOC107722572 other upstream 154124 29067982 ~ 29152545 (-)
LOC122325037 sh2d3a,LOC107662707,LOC107685029,LOC107560576,LOC107727164 other upstream 187828 29101686 ~ 29112734 (-)
G7569 gtf3c1,LOC107678316 other upstream 387949 29301807 ~ 29310598 (-)

Expression


Co-expression Network