si:ch211-133l11.10 (si:ch211-133l11.10,LOC107594285,LOC107746109,LOC107703823)


Basic Information

Item Value
gene id si:ch211-133l11.10
gene name si:ch211-133l11.10,LOC107594285,LOC107746109,LOC107703823
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26380117 ~ 26383692 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222700.1
GATGCCGTCGCAGGACGGGGTGAATGAAGACGACGGTCCGCCTCCGGTTCCACCGCGAGCGGCTCCTCAGCGACACTCACCGGCGTCCGCCGCCGCGCCTGAGCGCCGGGTCAAGTGCGTGCTGGTCGGGGACGCGGCGGTGGGTAAAACGAGCCTGATCATCAGCTACACCACTAACGGATATCCGGCAGAACACGTTCCCACCGCCTTTGACAACTTCACAGCTAGGGTTGTGGTGGACGGAAGACCAGTTCAACTTCAACTGTGTGATATGGCAGGACAGGACGAGTTTGAGCGGCTCCGTCCGCTCTGTTACCGCGAAGCCGACGTCTTCCTGCTCTGCTACAGCGCGGTTCTTCCGTCGTCCTTCAGGAGCGTGGCGACCCGCTGGGCCCCCGAGGTCCATCGCCTGTGTCCGGGCGTTCCCATCATCCTCGTGGGCACCCAGAGCGACCTGCAGGAGGACGTCCAGGTGCTGATCCGCCTCGCCGACGGCCGGGAGAAACCGGTGAGCGGAGACGAGGCCCGGCTGTGCGCCCGGAGCATCGGCGCCGTCACGTTTGTCGAATGCTCAGCGCTGACGCAGAAGAACCTGAAGGAGGTGTTCGACGGAGCCATCCTGGCCAGCATGAGGCACGCGGAGGAGGCCGCGCGGCCGAGGACGCACACGCTCAGAGACAAAACTCCTGATAAAATCAAGCAGCTCTCAGAAACATGGTGGAGGAAACTGAGCTGCGTCCAGAGCTTTGACCTTCAGTGAGAACCCGGTTAAGCCACGCTGGTGGGTCCGAGATGCCTTTCTTGCTCGAGTCAGATGctcactatttaaataaaaccctCTTAAAGTCAAGCGCAGATGAAATGGGATTCAAAGCCTCGTTGTGCTGTGACGCGGAGAGCGACGACGTAGAAATGGACATGAATTTTGTGCTTTGTGTCACGTTTACAGCAACGATATTAGTTTGGAATGACGTGAAGTGAACTGTGGGCAAAAACGAAAACGCGCATTAGGAAAGTAAGGTCCTTTTTGGTTCAAGTTCACGTCTAGGTCACCTAAAAACTTTAAAGGACGTGAAAGATCAACTGACAAATCATTGCAAGGACTTTTATTTCGTAAAAGCACGAAAGGAAGGACGAAGATAGCATTTGTGAAATTATATATGATTGTTATAGAACAATAGATgttgaatataatatttatagacAGTGTGGAGTACGCTCTTTTTATAAAGAAGtccatttcattaaaaaaataaataaataaattacatttcgaaatatattcaaatagagaagttaatgtatatatatatattttaaaaaaattctatatgtatttgtttttctgtcttaaTTGGCCCTCCTGCTGTATACACCTGTGACCCAGACGTGTTTGTGGTTTGGCCCAGTACCTTGCATTCATAGGATTAGCTGATCCTTTAAACAGACTGAAGATCAAGACTGAAGGAGTCGGGTTTGATGTCTCACCCACAGTCTGCCTCATTCCGACGGTTTACTTCATTTTATACTCGAAATAAGTCGCACAAAGGCAGTGAAATAAAAACCGTTGCAGCGTTTTTCGTCGTGCACGTTCAAATGAGTCCGCTTCAGAGCCTCTCCCCCGGCGGGTCTCGTTCAGACGGCCCTGTCGAAGCTCCGTATGGCCCTAAAGCCTTTAATGGGATCTGATTCATTTACATCACTGCGTTACGCTTTTCCCTCGGCAATCTGGGGCTCTCGCGGCAGACGTAATTACTGCCGTCACAGAATAACAATTACCTGCGCGATGACCCTCACCGCGTGAATATAGCGTTGAATGAGCTCCTTTAAACTCTCTCTGTGCatcataatgtaaataaaacatagcaAAATCTTATTGCGTTCCACAtttatcagttcatgcattgaattaaaacaatgttttaatcaGCAGCaccatgttttaatatttgagcTGCAGAAATGTACGCGCGCATTTGCTTTATATACGTCACTGTGCAAAGGTTTTAGGCAGGcgtgaaaaaatgctgtaaacgaAAGGACGCTCTCGAAAACGGAAGtgctaaacatttattttctcaaatgaacaaaagagaaatctaaatcaGAACAATATCTGGTGTAAGATCAGGGCTGTGTGGGGGCCGTGCCATCACTTCTACTTGTTCTTCTTTAGGCTGAAGATAGTTCTTAATGACTGTATGTTTGGGgaacaccattaatcctgaccaaatctccagctccatttgcagaaatgcagccccAAGCGTTTAaaggaacctccaccatgcttcactgttgcccTTCGACGATCAAACTGCCTTCTGCTACAGTCAAATATTTTCAGATGgcacctgctgccatttttctgaGCCTCGGTTCCTATGTTTCCGTGTCGCTCGGCCTTGTTTTCCACCTCTGAGGTATGGCTTTTTGGCTGCTTTCATGCTCTTTCACAAAGACCACTTCAGGCCAGACTTCTCCGGACAGTAGATGGGTGTAATTGGGTCCCGCTGGTTTCTGCCAGTTCTTGAtgaaaccccagtctgctttgaaatcttcGTCTGGGAGAGACCTTGTTGATGCCGTATAACTACCCTGTGTCTTCTTGCTCTGCTCAATCTTGCCAACTGCCTTTCACGACCTCACATCGCTAGCAGACCTTGTCTGTTCCTCACCCGGTTTTCAGCCTCCCACACAGCTCTTTCTGTTTGAGTTCAGGACTGGGTTTCGACCTGCGTGTGACACTGATGATCATCAGCACTAGTTTGGTGTAATTGtttgatcatacacctgactataatcctacagaatccctgactttgtgcaggtgtacctataagaattgatgctggtttGAAGGCAAAAGGTAGTAagaccaaatattgatttggtTTAGATTATTCATTTGTTCGCTCACTTtgaattttgaatatatattgatagttttttttgtatgaagcaaatgcatgcaa

Function

symbol description
si:ch211-133l11.10 Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOU (ras homolog family member U).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoU-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222700.1 True 2975 mRNA 0.47 3 26380117 26383692

Neighbor

gene id symbol gene type direction distance location
taf5l taf5l,LOC107703828,LOC107700873,LOC107580738 coding downstream 25919 26348591 ~ 26354198 (-)
capn9 capn9,LOC107729683,LOC107598506,LOC107700872,LOC107746105,LOC107594336,LOC107703830 coding downstream 31621 26340724 ~ 26348496 (-)
ltv1 ltv1,LOC107746106,LOC107700874,LOC107729687 coding downstream 39860 26334613 ~ 26340257 (-)
LOC122353257 NA coding downstream 64428 26313205 ~ 26315689 (-)
akt3b akt3b,LOC107594289,LOC107703832,LOC107729704,LOC101071975,LOC108259077,LOC108438606,LOC101174244 coding downstream 96374 26271910 ~ 26283743 (-)
rfx1b LOC107703707,LOC107746111,LOC107594279,LOC107729889 coding upstream 42979 26426671 ~ 26440524 (-)
nthl1 nthl1 coding upstream 92960 26476652 ~ 26481563 (-)
pkd1a pkd1,LOC107729871,LOC107700794,LOC107598528 coding upstream 143198 26526890 ~ 26606252 (-)
wu:fj19g03 NA coding upstream 255492 26639184 ~ 26643244 (-)
tekt4 tekt4,LOC107729531,LOC107598552,LOC107709630 coding upstream 296359 26680051 ~ 26684473 (-)
G6749 LOC107729639,LOC107598502,LOC107700871,LOC107736507,LOC107703825,LOC107594284 non-coding downstream 5494 26373662 ~ 26374623 (-)
G6747 LOC103457336,LOC103359577 non-coding downstream 10598 26368950 ~ 26369519 (-)
G6741 NA non-coding downstream 12514 26363672 ~ 26367603 (-)
G6596 NA non-coding downstream 189607 26189058 ~ 26190510 (-)
G6670 NA non-coding downstream 283860 26092009 ~ 26096257 (-)
G6769 NA non-coding upstream 61205 26444897 ~ 26446738 (-)
G6799 NA non-coding upstream 128700 26512392 ~ 26512958 (-)
G6801 NA non-coding upstream 129877 26513569 ~ 26513920 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding upstream 269550 26653242 ~ 26706828 (-)
G6834 NA non-coding upstream 305662 26689354 ~ 26690490 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 244631 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 516330 25831324 ~ 25863787 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 664413 25714102 ~ 25715704 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other downstream 823135 25547725 ~ 25556982 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other downstream 977762 25400384 ~ 25402355 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other upstream 33167 26416859 ~ 26417897 (-)
LOC122353745 slc9a3r2,LOC107729606 other upstream 70558 26454250 ~ 26523402 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 418218 26801910 ~ 26802954 (-)
si:ch211-286b5.5 NA other upstream 533977 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 600852 26984544 ~ 26992582 (-)

Expression


Co-expression Network