si:ch211-286b5.4 (LOC107709606,LOC107703789,LOC107594247)


Basic Information

Item Value
gene id si:ch211-286b5.4
gene name LOC107709606,LOC107703789,LOC107594247
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26912603 ~ 26917615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223173.1
AGCTGCTGGTAAACAGACTGATGAGATGATTGAAGGAGAAACCTGCTGGTGCTTGATTAAAGGAACCAGATTCACTTGAGCTCTGTAACAGTCAGTGTGAACCTTTTCTGCTCTGTATCTTCAGGGTCTGGGTTTATGGCACACAAACGGGTTGCAAGATCCCCAGGATCCCAGAGGAGAGCTCCGGACtgctcagagatcCTGAGCTCGGTGATTCTGTGTCCTGATGAAAACACTCGGAGCTTCTCACACGGGATCTCCAGAGACCTCTCCAGCTCTCTACAGGAGCAGCTTCTAGAGAAGGACCTCCACATCTCCAGACTGCAAGATGCTCTGAGCTCTGAAAGAGAAAAGtgCGCGCGGCTCCAGGTCCGCTGTCACCAGCAGGGAGCGGAGCTCAGACGTCGAGAGCAGCACATCCAGCGCATGAGAGAGAGACTCACAGATAGACACAGACCCCGCGGCGCCTCCATGGAGATGATGAACGTTCTGCCGAAGCGGACCGGACGGAGAGAGCCTGGCTTCAAGAGCGCAAGGGCTGATGGGAGGACGGAGGAAGCTCTGCGTCTGCTGTTGGACCGGAGGGAAGCCGAGCTCAGGGAAGCCATGAAGCTGCGACACGGCCTCACCACACTACTGCACATGCTCAGAAATAACATGGAACAGGCGAGAAACACAACCacgCTACAAGACGTCAGCAATGCAGAACCAGAAGAGGAGACGGACGACGACGCTCTGGTCCAATCGGAGCGGTGCCTCGGTGATCATGTGACCGGAGGTGTGGTCCAGGAGTGGACCCAAGTCCAGAAGAGACTCAGGGAGCTCGTGTCAAAGAGTGCTTGTGCTCGGGGAACTGACCAGGAGAAGCTGCTGGCTCGTctggaggaggagctggagCAGAGCAGACGGCTGATCCGAGCGCAGCAGCACTTGCTGCAGgacagTGTGAGCGCGCCCCTCCCCGCCGTGCTGGTGGACTGCTACTATCTGGAGGAGTGGGAGCGGCTGCAGGGCCACTGGGAGGAGCTTAACAGGCAGAGGCGGAGCTTCCAGCAAGAGAGGCAGGCCTTCACTGAAGCTGCTATCCGATTGGGTCACGAGAGATGTGAGTTTGAGCAGCAGAAGGCGTCCCGTTTGAAGGCAGACTTCTTCGGTCTTTCTCCTGTCAAGAAGACCTCTCAGTGGAACAGGAGAGAAAGCACAGCGCTCAGCGAcctacgtgcagCTGTACCAGAgcagctctctctgtctccctgtACCACGCCGTCATCtgaggggtcagaggtcacgccGGGGTCCCGTCTGAACACGGTCATGACCCCCAACACCCCTGAGCTGTACTCGGCTCTTAAACTTCCCTACTACAGGTCAGAGCGGATGCTTCAGTCGCCTGATGAGTGCAACCCGGACTGGCCCTTTTAGTTCACACGCTTCAGTACCATGAGCTGgaaataatgttgttgttgtttttgtattttcaaagatgcatttgaaaaaataaaagtatgccAT
>XM_043223267.1
CTGCTGGTAAACAGACTGATGAGATGATTGAAGGAGAAACCTGCTGGTGCTTGATTAAAGGAACCAGATTCACTTGAGCTCTGTAACAGTCAGTGTGAACCTTTTCTGCTCTGTATCTTCAGGGTCTGGGTTTATGGCACACAAACGGGTTGCAAGATCCCCAGGATCCCAGAGGAGAGCTCCGGACtgctcagagatcCTGAGCTCGGTGATTCTGTGTCCTGATGAAAACACTCGGAGCTTCTCACACGGGATCTCCAGAGACCTCTCCAGCTCTCTACAGGAGCAGCTTCTAGAGAAGGACCTCCACATCTCCAGACTGCAAGATGCTCTGAGCTCTGAAAGAGAAAAGtgCGCGCGGCTCCAGGTCCGCTGTCACCAGCAGGGAGCGGAGCTCAGACGTCGAGAGCAGCACATCCAGCGCATGAGAGAGAGACTCACAGATAGACACAGACCCCGCGGCGCCTCCATGGAGATGATGAACGTTCTGCCGAAGCGGACCGGACGGAGAGAGCCTGGCTTCAAGAGCGCAAGGGCTGATGGGAGGACGGAGGAAGCTCTGCGTCTGCTGTTGGACCGGAGGGAAGCCGAGCTCAGGGAAGCCATGAAGCTGCGACACGGCCTCACCACACTACTGCACATGCTCAGAAATAACATGGAACAGGCGAGAAACACAACCacgCTACAAGACGTCAGCAATGCAGAACCAGAAGAGGAGACGGACGACGACGCTCTGGTCCAATCGGAGCGGTGCCTCGGTGATCATGTGACCGGAGGTGTGGTCCAGGAGTGGACCCAAGTCCAGAAGAGACTCAGGGAGCTCGTGTCAAAGAGTGCTTGTGCTCGGGGAACTGACCAGGAGAAGCTGCTGGCTCGTctggaggaggagctggagCAGAGCAGACGGCTGATCCGAGCGCAGCAGCACTTGCTGCAGgacagTGTGAGCGCGCCCCTCCCCGCCGTGCTGGTGGACTGCTACTATCTGGAGGAGTGGGAGCGGCTGCAGGGCCACTGGGAGGAGCTTAACAGGCAGAGGCGGAGCTTCCAGCAAGAGAGGCAGGCCTTCACTGAAGCTGCTATCCGATTGGGTCACGAGAGATGTGAGTTTGAGCAGCAGAAGGCGTCCCGTTTGAAGGCAGACTTCTTCGGTCTTTCTCCTGTCAAGAAGACCTCTCAGTGGAACAGGAGAGAAAGCACAGCGCTCAGCGAcctacCTGTACCAGAgcagctctctctgtctccctgtACCACGCCGTCATCtgaggggtcagaggtcacgccGGGGTCCCGTCTGAACACGGTCATGACCCCCAACACCCCTGAGCTGTACTCGGCTCTTAAACTTCCCTACTACAGGTCAGAGCGGATGCTTCAGTCGCCTGATGAGTGCAACCCGGACTGGCCCTTTTAGTTCACACGCTTCAGTACCATGAGCTGgaaataatgttgttgttgtttttgtattttcaaagatgcatttgaaaaaataaaagtatgccAT
>XM_043223346.1
TGCTGGTAAACAGACTGATGAGATGATTGAAGGAGAAACCTGCTGGTGCTTGATTAAAGGAACCAGATTCACTTGAGCTCTGTAACAGTCAGTGTGAACCTTTTCTGCTCTGTATCTTCAGGGTCTGGGTTTATGGCACACAAACGGGTTGCAAGATCCCCAGGATCCCAGAGGAGAGCTCCGGACtgctcagagatcCTGAGCTCGGTGATTCTGTGTCCTGATGAAAACACTCGGAGCTTCTCACACGGGATCTCCAGAGACCTCTCCAGCTCTCTACAGGAGCAGCTTCTAGAGAAGGACCTCCACATCTCCAGACTGCAAGATGCTCTGAGCTCTGAAAGAGAAAAGtgCGCGCGGCTCCAGGTCCGCTGTCACCAGCAGGGAGCGGAGCTCAGACGTCGAGAGCAGCACATCCAGCGCATGAGAGAGAGACTCACAGATAGACACAGACCCCGCGGCGCCTCCATGGAGATGATGAACGTTCTGCCGAAGCGGACCGGACGGAGAGAGCCTGGCTTCAAGAGCGCAAGGGCTGATGGGAGGACGGAGGAAGCTCTGCGTCTGCTGTTGGACCGGAGGGAAGCCGAGCTCAGGGAAGCCATGAAGCTGCGACACGGCCTCACCACACTACTGCACATGCTCAGAAATAACATGGAACAGacgCTACAAGACGTCAGCAATGCAGAACCAGAAGAGGAGACGGACGACGACGCTCTGGTCCAATCGGAGCGGTGCCTCGGTGATCATGTGACCGGAGGTGTGGTCCAGGAGTGGACCCAAGTCCAGAAGAGACTCAGGGAGCTCGTGTCAAAGAGTGCTTGTGCTCGGGGAACTGACCAGGAGAAGCTGCTGGCTCGTctggaggaggagctggagCAGAGCAGACGGCTGATCCGAGCGCAGCAGCACTTGCTGCAGgacagTGTGAGCGCGCCCCTCCCCGCCGTGCTGGTGGACTGCTACTATCTGGAGGAGTGGGAGCGGCTGCAGGGCCACTGGGAGGAGCTTAACAGGCAGAGGCGGAGCTTCCAGCAAGAGAGGCAGGCCTTCACTGAAGCTGCTATCCGATTGGGTCACGAGAGATGTGAGTTTGAGCAGCAGAAGGCGTCCCGTTTGAAGGCAGACTTCTTCGGTCTTTCTCCTGTCAAGAAGACCTCTCAGTGGAACAGGAGAGAAAGCACAGCGCTCAGCGAcctacgtgcagCTGTACCAGAgcagctctctctgtctccctgtACCACGCCGTCATCtgaggggtcagaggtcacgccGGGGTCCCGTCTGAACACGGTCATGACCCCCAACACCCCTGAGCTGTACTCGGCTCTTAAACTTCCCTACTACAGGTCAGAGCGGATGCTTCAGTCGCCTGATGAGTGCAACCCGGACTGGCCCTTTTAGTTCACACGCTTCAGTACCATGAGCTGgaaataatgttgttgttgtttttgtattttcaaagatgcatttgaaaaaataaaagtatgccAT

Function

NR:

description
afadin- and alpha-actinin-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223173.1 True 1512 mRNA 0.56 13 26912603 26917615
XM_043223267.1 False 1504 mRNA 0.56 13 26912603 26917613
XM_043223346.1 False 1494 mRNA 0.56 13 26912603 26917612

Neighbor

gene id symbol gene type direction distance location
nanos3 NA coding downstream 787 26911058 ~ 26911816 (-)
cc2d1a cc2d1a,LOC107747148,LOC107594251,LOC107598465 coding downstream 5591 26893812 ~ 26907012 (-)
mri1 mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470 coding downstream 21321 26879067 ~ 26891282 (-)
zgc:158803 zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937 coding downstream 34453 26872656 ~ 26878150 (-)
pane1 cenpm,pane1 coding downstream 40619 26870294 ~ 26871984 (-)
LOC122349409 NA coding upstream 62690 26980305 ~ 26983587 (-)
LOC122344082 adgre9,LOC107752624,LOC107653768,LOC107558979 coding upstream 96862 27014477 ~ 27024300 (-)
dnajb1b dnajb1b,LOC107573606,LOC107694604,LOC107747146,LOC107703757,LOC107594241 coding upstream 134112 27051727 ~ 27054595 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602,LOC107703772,LOC107594238,LOC107714119 coding upstream 148543 27066158 ~ 27067828 (-)
zgc:136908 zgc:136908,LOC107594236,LOC107703743,LOC108442223,LOC102292797,LOC101483411 coding upstream 151059 27068674 ~ 27076809 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding downstream 46866 26809948 ~ 26865737 (-)
G6870 NA non-coding downstream 148123 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 154311 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 163647 26748723 ~ 26748956 (-)
G6834 NA non-coding downstream 222113 26689354 ~ 26690490 (-)
G6887 NA non-coding upstream 15517 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 76823 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 89032 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 89888 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 91541 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 109649 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 389201 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 494706 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 777117 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 1048816 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 54 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 66929 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 278623 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 322709 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 457702 27375317 ~ 27385079 (-)

Expression


Co-expression Network