zgc:158803 (zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937)


Basic Information

Item Value
gene id zgc:158803
gene name zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26872656 ~ 26878150 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223471.1
GCGGCACTTCCTCGAGGCCGAGTAACCAAGCGGGAGCAGCGCGCGCGGGTCGGAAGTCTCATTCCGAGAGAgcgagaaaaagaaataaaacaataaagcaaCAACAAGTAAACACTGTCAAAACTTTGCGCATATGGACCACTACACAAATCACTGAACTGCGGATCGATAAAGCAGCGCTAGGGCTGATAAATAAGCGCGCATAGGGCGGATTGAGGAAGAGTtagccgccgccgccgctgctAACGCGCGACGCTAGCGCCCTGATTCATGACTGACTGATTTCAGCGGCTTTTCGGCTATAAACCGCGCTTTCCGTGGCCGCTCGGACTCAGAGGCGTGCGCGGCGTCGGCGGGGAGCGTGTTAGCGAGTCGCAGCGGGCGGTTCGTGTGGTTTTCGGCGGCCGCTGGGCTCGAGGCCTGCTCTATGAGGAGTTAGTGGAGCGGCTCAGGCGGACGGGTCAGGACTCATCAGGCAGGTATATTCACAGGTGTGCAGGTAAACGGGGGAAGATGTCGGCCCAGGCGCAGATGAGGGCCATGCTGGACCAGCTCATGGGCACTGGCAGAGATGGAGACACGATGAGGCAGCGGATCAAGTTCACGGACGAGCGGGTGTGTAAGAGTCACCTGCTGGAGTCCTGTCCTCATGACATACTGTCTGGAACCCGCATGGACCTCGGGGAGTGCGTGAAGATCCACGACCTGGCTCTGAGAGCGGATTACGAGATCGCCTCTAAACAGCAGGAGTACTTCTTCGAGCTGGATGCCACGGAGCACCTGCAGTCTTTCATCGCCGACTGCGACCGCAGGACCGAGCTGGCTAAGAAGCGGCTGGCTGAGACGCAGGAAGAGATCAGCGCTGAAGTGGCCGCTAAGGCGGAGCGTGTGCACGAGCTGAACGAGGAGATCGGGAAGCTGCTGGCGCGAGCGGAGCAGCTCGGCGGCGAGGGCAACGTGGAGGAGGCGCAGCAGGTGCTGGAGAAGGTGGAGAAAACACGCACCCTGAAGAAAGAGGCAGAGGACGTCTACCGTAACTCCATGCCGGCCTCCAGCTTCCAGCAGCAGAAGCTGCGCGTGTGCGAGGTGTGCTCCGCCTACCTCGGTCTCCACGACAACGACCGCCGCCTCGCCGACCACTTCGGGGGGAAGCTTCACCTGGGGTTCATCGAAATCAGGGAGAAACTTGAGAAGCTGCGGAAGGCTGTGACGGAGAAGCAGGAGCGCATGCGCATGAAGAGGAGAGAGGAGCGCGACAGGGACGAGGAGCGAGCCAGGGAGtgggagatggagagagagagggagcgcgAGCGGGAGAGAGAGCGGGAACGGGAGAGGGAGCGCGAgcgggagagagacagagagcgggAACGCCGGAGGTCCAGATCCAGAAGTGGCGAGCGATATcgGGAAGGAGGCAGCTCGTCCTCCCATCGCTCTCGCCGGCACCGTGAGGATGGAGAGAGGGAACGAGACCGGGAGaggaaacacagacacaaagagCGCCATCGCTCTCGCTCTCACTCACACAGGAGCAAGAGAAAGAGCAGGTCCTCACACACCAGAGAGCAGGAGCAGCCTCTGTCTCAGGAGAGATGGCGGGAGAACGCCGCGGACGAGAGATGGTGGGACAACGGCCGCAGGGACATGGAGAGGGAGCAGTCCCCCGTCTCCCCAGACATGAGCCGGATGAGAGAGCGGGAGAGATCCGTGTCTCTGGAGAGAGATCAGCGCTCCAGCTCCGAGGAGAGGGAGTCCGGAGAGATCTAGATACTTTACGTACTGCAGCTTCCGATCCCTGCACTGATCTGTCAATAACTGGACCAGCTTTCCGTCCGGTTACTCTTACGTCAGTAGAAGCTCCGCAGCTACAGAGAGGAAGCCAGTCACAGATttctcacgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgagagagagagaccagcATCATTATTTGAGATACAGGTGACACCTCAGACAGTTACACACTTTGACCTAGTTGATCCAAACTAGTCCGCAAACCAAAAGAGAGCATTTGACGGAAGTGCTGTAAAGGGAAAGAGTGCATTTAGaagtagtttattttttatgttgcaaAATAAGAGAGGCGGATGAAGGAGAACCTGCAGgaatataaaatagttttcatcttttttaactggctatgttcatttttatttttcctttttttttttttttttttttttaattaaaagctcCTTAAATGACTATTTTGATGTGGATAAttattttctcatgtttttcatttgatatGAATATAAACTGAGCTGAACTGAGCAGTAAACCTGGATTACAAtgtgattgatttttttgttttgtttttttcctccgcAAACACCAAACCATTtttgtccacacacacacacacacacacacaccggcacAGGTTTGTAGCTCCGCTCACATTTATTTCTCACGGTACCACGGCGTGTGTGAGTTTCTCTTGCCCCCTTTTTCTCACTCTTTGGTTTTGCTGTGTTGAGAGGTTGTCTTGAAACTTCATCTTGCCTTGTCATTTATgctatgaaataataaatctcTTGCTTTCATTGTTTAAA
>XM_043223543.1
CGCGGCACTTCCTCGAGGCCGAGTAACCAAGCGGGAGCAGCGCGCGCGGGTCGGAAGTCTCATTCCGAGAGAgcgagaaaaagaaataaaacaataaagcaaCAACAAGTAAACACTGTCAAAACTTTGCGCATATGGACCACTACACAAATCACTGAACTGCGGATCGATAAAGCAGCGCTAGGGCTGATAAATAAGCGCGCATAGGGCGGATTGAGGAAGAGTtagccgccgccgccgctgctAACGCGCGACGCTAGCGCCCTGATTCATGACTGACTGATTTCAGCGGCTTTTCGGCTATAAACCGCGCTTTCCGTGGCCGCTCGGACTCAGAGGCGTGCGCGGCGTCGGCGGGGAGCGTGTTAGCGAGTCGCAGCGGGCGGTTCGTGTGGTTTTCGGCGGCCGCTGGGCTCGAGGCCTGCTCTATGAGGAGTTAGTGGAGCGGCTCAGGCGGACGGGTCAGGACTCATCAGGCAGGTATATTCACAGGTGTGCAGGTAAACGGGGGAAGATGTCGGCCCAGGCGCAGATGAGGGCCATGCTGGACCAGCTCATGGGCACTGGCAGAGATGGAGACACGATGAGGCAGCGGATCAAGTTCACGGACGAGCGGGTGTGTAAGAGTCACCTGCTGGAGTCCTGTCCTCATGACATACTGTCTGGAACCCGCATGGACCTCGGGGAGTGCGTGAAGATCCACGACCTGGCTCTGAGAGCGGATTACGAGATCGCCTCTAAACAGCAGGAGTACTTCTTCGAGCTGGATGCCACGGAGCACCTGCAGTCTTTCATCGCCGACTGCGACCGCAGGACCGAGCTGGCTAAGAAGCGGCTGGCTGAGACGCAGGAAGAGATCAGCGCTGAAGTGGCCGCTAAGGCGGAGCGTGTGCACGAGCTGAACGAGGAGATCGGGAAGCTGCTGGCGCGAGCGGAGCAGCTCGGCGGCGAGGGCAACGTGGAGGAGGCGCAGCAGGTGCTGGAGAAGGTGGAGAAAACACGCACCCTGAAGAAAGAGGCAGAGGACGTCTACCGTAACTCCATGCCGGCCTCCAGCTTCCAGCAGCAGAAGCTGCGCGTGTGCGAGGTGTGCTCCGCCTACCTCGGTCTCCACGACAACGACCGCCGCCTCGCCGACCACTTCGGGGGGAAGCTTCACCTGGGGTTCATCGAAATCAGGGAGAAACTTGAGAAGCTGCGGAAGGCTGTGACGGAGAAGCAGGAGCGCATGCGCATGAAGAGGAGAGAGGAGCGCGACAGGGACGAGGAGCGAGCCAGGGAGtgggagatggagagagagagggagcgcgAGCGGGAGAGAGAGCGGGAACGGGAGAGGGAGCGCGAgcgggagagagacagagagcgggAACGCCGGAGGTCCAGATCCAGAAGTGGCGAGCGATATcgGGAAGGAGGCAGCTCGTCCTCCCATCGCTCTCGCCGGCACCGTGAGGATGGAGAGAGGGAACGAGACCGGGAGaggaaacacagacacaaagagCGCCATCGCTCTCGCTCTCACTCACACAGGAGCAAGAGAAAGAGGTCCTCACACACCAGAGAGCAGGAGCAGCCTCTGTCTCAGGAGAGATGGCGGGAGAACGCCGCGGACGAGAGATGGTGGGACAACGGCCGCAGGGACATGGAGAGGGAGCAGTCCCCCGTCTCCCCAGACATGAGCCGGATGAGAGAGCGGGAGAGATCCGTGTCTCTGGAGAGAGATCAGCGCTCCAGCTCCGAGGAGAGGGAGTCCGGAGAGATCTAGATACTTTACGTACTGCAGCTTCCGATCCCTGCACTGATCTGTCAATAACTGGACCAGCTTTCCGTCCGGTTACTCTTACGTCAGTAGAAGCTCCGCAGCTACAGAGAGGAAGCCAGTCACAGATttctcacgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgagagagagagaccagcATCATTATTTGAGATACAGGTGACACCTCAGACAGTTACACACTTTGACCTAGTTGATCCAAACTAGTCCGCAAACCAAAAGAGAGCATTTGACGGAAGTGCTGTAAAGGGAAAGAGTGCATTTAGaagtagtttattttttatgttgcaaAATAAGAGAGGCGGATGAAGGAGAACCTGCAGgaatataaaatagttttcatcttttttaactggctatgttcatttttatttttcctttttttttttttttttttttttaattaaaagctcCTTAAATGACTATTTTGATGTGGATAAttattttctcatgtttttcatttgatatGAATATAAACTGAGCTGAACTGAGCAGTAAACCTGGATTACAAtgtgattgatttttttgttttgtttttttcctccgcAAACACCAAACCATTtttgtccacacacacacacacacacacacaccggcacAGGTTTGTAGCTCCGCTCACATTTATTTCTCACGGTACCACGGCGTGTGTGAGTTTCTCTTGCCCCCTTTTTCTCACTCTTTGGTTTTGCTGTGTTGAGAGGTTGTCTTGAAACTTCATCTTGCCTTGTCATTTATgctatgaaataataaatctcTTGCTTTCATTGTTTAAA

Function

symbol description
zgc:158803 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L2 (LUC7 like 2, pre-mRNA splicing factor).

NR:

description
PREDICTED: putative RNA-binding protein Luc7-like 2-like

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:0005685 U1 snRNP cellular_component
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K13212 LUC7L2; RNA-binding protein Luc7-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223471.1 True 2589 mRNA 0.54 10 26872656 26878149
XM_043223543.1 False 2587 mRNA 0.54 10 26872656 26878150

Neighbor

gene id symbol gene type direction distance location
pane1 cenpm,pane1 coding downstream 672 26870294 ~ 26871984 (-)
rab1aa rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860 coding downstream 10886 26857457 ~ 26861770 (-)
sertad2a NA coding downstream 18842 26850229 ~ 26853814 (-)
peli1a peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798 coding downstream 38902 26821073 ~ 26833754 (-)
vps54 vps54,LOC107709616,LOC107700845,LOC107598476 coding downstream 53485 26803408 ~ 26819171 (-)
mri1 mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470 coding upstream 917 26879067 ~ 26891282 (-)
cc2d1a cc2d1a,LOC107747148,LOC107594251,LOC107598465 coding upstream 15662 26893812 ~ 26907012 (-)
nanos3 NA coding upstream 32908 26911058 ~ 26911816 (-)
si:ch211-286b5.4 LOC107709606,LOC107703789,LOC107594247 coding upstream 34453 26912603 ~ 26917615 (-)
LOC122349409 NA coding upstream 102155 26980305 ~ 26983587 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding downstream 6919 26809948 ~ 26865737 (-)
G6870 NA non-coding downstream 108176 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 114364 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 123700 26748723 ~ 26748956 (-)
G6834 NA non-coding downstream 182166 26689354 ~ 26690490 (-)
G6887 NA non-coding upstream 54982 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 116288 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 128497 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 129353 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 131006 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 69702 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 349254 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 454759 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 737170 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 1008869 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 39519 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 106394 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 318088 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 362174 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 497167 27375317 ~ 27385079 (-)

Expression


Co-expression Network