mri1 (mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470)


Basic Information

Item Value
gene id mri1
gene name mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26879067 ~ 26891282 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223872.1
GCTACAGGGGCGGGGCTTCCTGCCGGAGCGAACACGCGGTTCCGTGATCGGTGCGCTTTCCCCCCTCGATCCGTGCAGACGCCCACACCTTGTGATTCGCGATTCATGATTCACGAGTCGCAGCGCTTCTAGCACACCCCGACTCTCCACCGGACCGACGGAACCCGTCACACATCATCGGCGCCAGCGCTCCCGGAATACGTTCAGCCGCATCTCATACGGGTCATGACGCTGGAGGCGATCCGGTACCGGCCCGGTTCTCTGCAGATCCTCAACCAGCTGCTGCTGCCGCGCGAGACCGTGTACGACGAGATCCGCTCGGTGCGGGACGGATATGAGGCCATCAAGAGCATGAAGGTGCGTGGCGCTCCCGCCATCGCCATCGTGGGCTGCCTGAGCCTGGCCGTGGAGCTGCGGGCGGGCGCCGGGGGCGACGACCTCGTGTCCTTCATCAGGGACTCGCTGTGCCACCTGACGTCCGCTCGACCCACGGCGGTCAACATGGGCCGCGCCGCCCGAGAGCTCATGGAGTTCACAGAGAACGAGAGCATGGAGAAGAACACAGAGCAGCTCCGGGACAGCGTGATTGGCTGGATCGAGGAGATGTTGGAGCGAGACGtgaacgacaacaaaaaaatcgGCAACTACGGCGCGCAGCACATCCTGTCGGGCGTCCCGCGAGACTCGGTCACCATCCTCACGCACTGTAACACCGGCAGCCTGGCCACCGCGGGATACGGCACGGCTCTCGGAGTGGTGCGGTCGCTGCATGCGCTGGGCCGCTTGAAGCGTCTCTACTGCACAGAGACCCGGCCCTACAACCAAGGGGCCCGGCTGACGGCGTACGAGGCCGTGGCCGAGGGCTTCCCCGCCACCCTCATCACAGACAGCATGGCAGCGCTGGCCATGAGGGAGAAGGGCATCACGGCTGTCGTCGTGGGAGCAGATAGGGTTGTGGCCAACGGCGACACGGCCAACAAAGTGGGCACGTATCAGCTGGCCATCGCTGCCAAGCATCACGGCGTGCCGTTTTACGTGGCGGCGCCCAGCACGTCCTGCGACCTGAGTCTGGAGAGCGGACGAGACATCGTGATCGAGGAGCGTCCGGCCGAGGAGCTCACCAGCATCAACGGGGTTCCTGTAGCCGCTCCTGgGATCGACGTGTGGAACCCGGCGTTCGACGTCACTCCTCACCAGCTGATCACGGGCGGCATCATCACGGAGCTGGGCGTGTTCCTGCCGTCTGAACTCCAGGCCGCTCTCACGGGGAGACTCACGGCTCTGTAGGCCTCGCTCCCTCCTCGTGTTTTCACCTCGCTGTGGTGGAAGTGGCACctttaattacacacacaagCGTCGGCACTGAGGTGTAAACAAGGTATACTAGGCACGTTCGATTCGATTCAACACTTAACGTGGAATAACACCATGTGACACACACTTGTACAACCCAGGGATGCttgtaatcacacacacacacacactcacacacacacacaagtacgttcttcttctctctgtgtgtacAGCTCATGTCACGTCATCTCATGTCTTGTTCCTTTTTCCACTCGTTTCTTCCCCCTCGATCTGGCTCGGCTCCAGTTTTTAACAGGAAGCGTTTCACAGAGGAGGTAGACGGTGTCGAACATTCAGagtgtttcaaaataaaagtcttacgACGAATACGGGTCAACTGATGCCCTTTAAGGGGGAACCTCATGAACACACCCGGGTcgtatttcaccccaaaatcaaatgagaaattaatttgtttttatttttaattaataacaggttttttttacaactgttcattgtgattttaatgacacttaaattatttttcaaattttcacCAGTATAACACCAAACACATTTTCTAACTAAAttctacattaaaatattattaaacaatgttatGTATTGCATTACCGTATTTgtttactgtaatattgtaaaaaaaaaaaaaaaaaactatattgtaGTAATGAGAATCCCAATAAAGATTAAGATGAAgtgcatttcaaaaacaaacaaaataaaaactttaccTTTTTTGCATTCTATTACTATTAAGGcgtttttgtaagaaatgtatttaaaagtcCTCTTCGTGATCCCATGTTTTTTGCATAACCACCACTTCTTTTGGTTTTGAGGTGAAGTGTTTTCATGAGACTGTCCCTTACAGGTCTGACTGTTTATTAGCTATCGTAATAGATGTATGTCAAATATAAGCCCACTTTAGATGAGGGCTGTACTTTAATCTACACGTAGACGTGATTTATGCCGATCCGAGTGCCAGCTGAATAAACTATCTCATGTTACGaaatcaaaatgttatattaacattaagAGAGATCTGCAATCGAGCAAATACAACAAACGGTGTGAGCGTTCGTATTCAGATGACCTTTAACCTTACCAGtaaatacagtatgtaaagTCATTTAAACCCGGAACATGAAACCAAATTGTTTTCGCATACAACTACAGTTAAACCTGCGACGTGTCTTTAATCCTGTAATTTAGGCAGATGTATGTGACCGCGGTGTGGGAAAATGGTGCTATGGAGCTAGATGTTAGACAATACCTCAGAAGAGATTCCCAGACTCCTCTAGTACTTccactctgtttttttttttaccgtagtTCTGTGTTGTATTTAATCGCGCGCGATCGCAGGCGAGCCTGGGCGTGCGGCGGATCCCTCGGGATCCGGGCTTGCGCTCCGTGATACCGAATGTAACGAGGCCCGAGATCCTCACTGCCTTACGAGACCAGCAAAAACACCCCGCCCACTGATGTCCGATTGGCTGAATGCGACGGAGCCACGCCCACCGCTCAGAGAACAGCGCCGCCACTCACGGCTTTCCGAAATCACCACGGCAACCCGATTCATAATAAACCTCCTTAAAGTAACAACGTCCTGTTTTTTTTCACGTCAACGAACCTTAGTCGGGGTGACGTCATATTTAATTTCTGACCAATTAAAACGAGGTTAGACAGAATTGCAGCACGTTCCATGCATTGAACGGTGGTTTGGCGACGTAGCTGGTGAAAACATAAAACGGTTTTGAAAACGATGTCCTTTATAGTGCGTGCCGTGGCGGTACAGCCTCGTTTTGAACCCGCGTTAAATTCAAAATGGCGTCTAACCCGATGAAAGGACGGTTCGCACCaagaacgataactataaaAGATCGTTATAAAAAACgttttctgtattaaaaaatgGCCACAGCGAGAAGTATGTCGGTGGAATCCCTTTCAGaactgatgaataaaaatatattttgattcaGAATCAGTCTTGTTTTAACGGCCTCGAGAATTTAAAGCGTGTTCGTAGATTAAAAGGACGATGTCGTAAGCTAGCGTGGATACGTACACAGTTatcattcttggtgtgaacgggcctCAAGGTCTGTTTAGATGACGTCGGATCACGCACGGTAttgaatgcacatttattttttacagtttcatgCGTGTAAATGGACAAATGTAGCATCGAAACACTTAGAGCagctgtaaatgtgtttgtcaaatttttcttttttggtttttgatcCAAATTCTCGCGTAACGCAGCTCAAAAAAACGAaattcgtttaatttttttgccaaTTTCATTTTTTCGAAGACCGCGACTATGAACGGGGGGATGCGGAAAGGTTCGTTACGAAGACAAATGTAGCATAACTCGAGGTCATCCGTGTGGTTTTGTAGTGTTCTGAAGGTACAGAGTTTAGTTTTCACATCGCATcgattgtttttcatttctatttttacttaaaactgTGTGAGCTGATGATTTGTTTCATGTATATCTATACATTGTATATCCATGAATTGTGATTATTGGTGATGAAACTGATGTTTGAGAGGCCCTCTATAGACGGGACACGCCACTCGACGCTAATTCTACGATGaaatttacagaataaaagCTTTGGAGCTCTCGACGTGCACGGCCTGGCTCTTTTAGAAACTTAGCCGGCGTGGCCAAAGCTGTCAACATATATTCTAACGGTGAGACGGATGGGATGTCACGTCCTTCACCAGACAATCTGAACACAGGACGGTGAGTTGCATGTGCAGGGTCGGGCTGATAAAAGAGCTCATACGTTTTCCATGTGCTTTAGCGCGATGAGAGGAAACTCTTGTGCCAAAATGACGACGGTGACTGTGATCGGTGGACGGATGTCCGTCTGAGAGGACCTCTTcgtgtttctgtttgttctcGTTCTTCTAATTGATAATCACCGCTGGGTTTGATTTTGTATTCTGTGGAAGTAGTTggagaaaaaaactattacactggatgttttttatacatatgaatataatatacaacgTACATAAATTAAGAGATGTCTGTTACACATCGGAACAATAAACAGAGAGAACCAA

Function

symbol description
mri1 Predicted to enable S-methyl-5-thioribose-1-phosphate isomerase activity. Predicted to be involved in L-methionine salvage from methylthioadenosine. Predicted to act upstream of or within methionine biosynthetic process. Predicted to be located in cytoplasm and nucleus. Orthologous to human MRI1 (methylthioribose-1-phosphate isomerase 1).

NR:

description
PREDICTED: methylthioribose-1-phosphate isomerase

GO:

id name namespace
GO:0019509 L-methionine salvage from methylthioadenosine biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046523 S-methyl-5-thioribose-1-phosphate isomerase activity molecular_function

KEGG:

id description
K08963 mtnA; methylthioribose-1-phosphate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223872.1 True 4416 mRNA 0.48 6 26879067 26891282

Neighbor

gene id symbol gene type direction distance location
zgc:158803 zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937 coding downstream 917 26872656 ~ 26878150 (-)
pane1 cenpm,pane1 coding downstream 7083 26870294 ~ 26871984 (-)
rab1aa rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860 coding downstream 17297 26857457 ~ 26861770 (-)
sertad2a NA coding downstream 25253 26850229 ~ 26853814 (-)
peli1a peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798 coding downstream 45313 26821073 ~ 26833754 (-)
cc2d1a cc2d1a,LOC107747148,LOC107594251,LOC107598465 coding upstream 2530 26893812 ~ 26907012 (-)
nanos3 NA coding upstream 19776 26911058 ~ 26911816 (-)
si:ch211-286b5.4 LOC107709606,LOC107703789,LOC107594247 coding upstream 21321 26912603 ~ 26917615 (-)
LOC122349409 NA coding upstream 89023 26980305 ~ 26983587 (-)
LOC122344082 adgre9,LOC107752624,LOC107653768,LOC107558979 coding upstream 123195 27014477 ~ 27024300 (-)
G6856 LOC107736226,LOC107598471,LOC107700840 non-coding downstream 13330 26809948 ~ 26865737 (-)
G6870 NA non-coding downstream 114587 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 120775 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 130111 26748723 ~ 26748956 (-)
G6834 NA non-coding downstream 188577 26689354 ~ 26690490 (-)
G6887 NA non-coding upstream 41850 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 103156 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 115365 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 116221 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 117874 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 76113 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 355665 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 461170 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 743581 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 1015280 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 26387 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 93262 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 304956 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 349042 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 484035 27375317 ~ 27385079 (-)

Expression


Co-expression Network