rab1aa (rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860)


Basic Information

Item Value
gene id rab1aa
gene name rab1a,LOC107598472,LOC107747156,LOC105021598,LOC107666439,LOC107676578,LOC107594256,LOC107601860
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 26857457 ~ 26861770 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224041.1
TTATTATTCAAGCTTCACGTGCGGGTCGCCATTTTTACGTGCGTCCGGATCCCGGTTCCGCTCGTTTCTCTCCAAAAACCGCTTTTAACGCCGAGTAATAACGGATATCACCGGCAGACGACCCTCGAACCTCAATCGCCTTCGTCGCAAAGAAGACAAAGACAGATAACCAGGGCGTCTTCGTCGTCATGAATCCCGAATAtgaTTACCTGTTCAAGCTCCTCCTGATCGGAGACTCTGGCGTGGGGAAGTCCTGTCTTCTGCTGCGTTTCGCTGACGACACGTACACGGAGAGCTACATCAGCACGATCGGAGTGGACTTCAAAATAAGGACGATAGAGCTCGACGGAAAGACCATCAAGCTGCAGATCTGGGACACGGCCGGTCAGGAGCGCTTCCGCACCATCACGTCCAGCTACTACAGAGGAGCTCACGGGATCATCGTTGTTTACGACGTCACGGATCAGGAGTCCTTCAACAACGTCAAGCAGTGGCTTCAGGAGATCGATCGCTACGCCAGTGAAAACGTCAACAAGCTCCTGGTGGGAAACAAGTGTGATCTGACCACTAAGAAAGTTGTGGATTACACGACGGCGAAGGAGTTTGCGGACTCTCTGGGCATCCCGTTCCTGGAGACGAGCGCGAAGAGCTCCACTAATGTGGAACAGGCCTTCATGACCATGGCAGCAGAGATCAAGAGGAGGATGGGCCCCGGGGCCACCGCGGGGGGCCCCGAGAAATCCAACGTCAAGATTCAGAGCACGCCGGTCAAGACGTCCTCCGGAGGATGCTGCTGAGGAGCCAGCGACAGTAACCTTACCAACCATACGCCACAGCTGAGTTAGCaggaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagtgtgtgtgtgtgtgtgtgtgcaataaaGACTGTGAATATTAAAGATAAGGAGAGTAAGAGAGGATCAAATTAAACATTGCCTGGTATTGAATCATGCATGCACATGGATGCATGAGCAGACAAACACGTCTGCCGCCGGCTTCTCGGCTCAAATTCCGTGCGCTTCTTAGACAAGCATCCAAAAGCACTTCCTGAGGAGCGCCACCAGGTTTGGCTTTGAACTTCCTCTTCGGAACTCTGAAGGAAGCGGTGGACGGTGATGTCACAACTGACCTCGGAACAGCGGGTTCCGTTACCATTCCTTAACCCGGCGGGGTTGCTACGGCGACCTCTCCTTCAACCGCTGCCTTCTCTCTCGTTCGGTGGACCGTTCGCCCattaattctgttgttttttgtggggttttgtctgtttttttcagcatttcagtGACCAACGGCACACTTCCAATGAGCTAGTCCTGTTTCTGACCCGTGCCACCTTTCTGACAGCATTATCATCCCGTGgcctttttttgtaaatcgAGAAACAGGTTCACACAGCTCTATGAGTTTCTATCAGAATGTGggttattgtgtatatttagttGCCGGTAGCCATTCACTTCCATAGCAAGGAAACAAATAGAGTGAAAGTCAATGGCTGCtggcaaatgtttaaaaaatatgaaccCGAAAGAAGCTCAAACAGGCTTCATACAGCATAcggggagtaaatgatgaactGCTCCGTTAAAAGTCAATATTATCCATTAGTTATTATTGCTCTTAATTAGTTTTGATGCTTATACATCATGTATATTATATGGAAGCTTGCTTTTGTATCCATGGGATAAAAAAGCTCAAAATTGCTAAttgcagctttttacttcacaattcagatgtttttggggggttttttgctctgcctttttattgcaattatgagaaaatgtaaaaaatttcataatttcaaTATATAAACTCACAGTTGTGTA

Function

symbol description
rab1a Enables GTPase activity. Involved in several processes, including COPII-coated vesicle cargo loading; growth hormone secretion; and positive regulation of macromolecule metabolic process. Located in Golgi apparatus and extracellular exosome.

NR:

description
PREDICTED: ras-related protein Rab-1A-like isoform X2

GO: NA

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224041.1 True 1888 mRNA 0.48 6 26857457 26861770

Neighbor

gene id symbol gene type direction distance location
sertad2a NA coding downstream 3643 26850229 ~ 26853814 (-)
peli1a peli1a,LOC107700844,LOC107747159,LOC107598475,LOC107709617,LOC107594259,LOC107703798 coding downstream 23703 26821073 ~ 26833754 (-)
vps54 vps54,LOC107709616,LOC107700845,LOC107598476 coding downstream 38286 26803408 ~ 26819171 (-)
slc25a23a slc25a23a,LOC107747161,LOC107594260,LOC107703801 coding downstream 59443 26787308 ~ 26798014 (-)
LOC122350383 khsrp,LOC107703803,LOC107594262,LOC107700847,LOC107598477 coding downstream 70557 26778467 ~ 26786900 (-)
pane1 cenpm,pane1 coding upstream 8524 26870294 ~ 26871984 (-)
zgc:158803 zgc:158803,LOC107700834,LOC107747154,LOC107703792,LOC107598467,LOC107709610,LOC107594252,LOC108411937 coding upstream 10886 26872656 ~ 26878150 (-)
mri1 mri1,LOC107700835,LOC107594353,LOC107703717,LOC107598470 coding upstream 17297 26879067 ~ 26891282 (-)
cc2d1a cc2d1a,LOC107747148,LOC107594251,LOC107598465 coding upstream 32042 26893812 ~ 26907012 (-)
nanos3 NA coding upstream 49288 26911058 ~ 26911816 (-)
G6870 NA non-coding downstream 92977 26760004 ~ 26764480 (-)
G6874 NA non-coding downstream 99165 26754732 ~ 26758292 (-)
G6873 NA non-coding downstream 108501 26748723 ~ 26748956 (-)
G6827 gprc5b,gprc5bb,LOC107729503,LOC107578286,LOC107700862,LOC107598492,LOC107709629,LOC107703814 non-coding downstream 150629 26653242 ~ 26706828 (-)
G6887 NA non-coding upstream 71362 26933132 ~ 26942207 (-)
G6923 NA non-coding upstream 132668 26994438 ~ 26994699 (-)
G6926 NA non-coding upstream 144877 27006647 ~ 27007143 (-)
G6927 NA non-coding upstream 145733 27007503 ~ 27007987 (-)
G6929 NA non-coding upstream 147386 27009156 ~ 27009552 (-)
c1h19orf53 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other downstream 54503 26801910 ~ 26802954 (-)
LOC122353745 slc9a3r2,LOC107729606 other downstream 334055 26454250 ~ 26523402 (-)
smdt1b LOC107598503,LOC107700869,LOC107594281,LOC107746113,LOC107703822 other downstream 439560 26416859 ~ 26417897 (-)
G6592 ucp1,LOC107730009,LOC107598545,LOC107703842,LOC107700810 other downstream 721971 26130788 ~ 26135486 (-)
patl1 patl1,LOC107598520,LOC107657997,LOC107594300,LOC107703847,LOC107746119 other downstream 993670 25831324 ~ 25863787 (-)
si:ch211-286b5.5 NA other upstream 55899 26917669 ~ 26920034 (-)
LOC122349164 NA other upstream 122774 26984544 ~ 26992582 (-)
LOC122344379 NA other upstream 334468 27196238 ~ 27202628 (-)
LOC122343833 LOC107749248,LOC107594233,LOC107703686 other upstream 378554 27240324 ~ 27255067 (-)
LOC122344630 LOC107578363,LOC107571875,LOC107575964,LOC107575480,LOC107571874,LOC107574523,LOC107576205 other upstream 513547 27375317 ~ 27385079 (-)

Expression


Co-expression Network