esf1 (esf1,LOC107757029,LOC107747407,LOC107684260,LOC107675607)


Basic Information

Item Value
gene id esf1
gene name esf1,LOC107757029,LOC107747407,LOC107684260,LOC107675607
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 24977040 ~ 24984030 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225434.1
gcaaaagggggcgtggcttGCAAGCTGTAGCGGAAGTAGTGGAGCATCACGGGTAAACACGTGTGGAGAAGCGCTGTAAAATCGCACGGAAACCTAGTAGGTTAGGCTCTTCCAGATCATCACCATGTCCTCCAAAAACAGCGCAAGCGGCGACGACCGCTTCTCGAAGGTCAAGAAAGACCCCCGCTTCTGGGAGATGCCCAGCAGAGAGCACAAAGTCAAAATCGACAAGCGTTTCCGGTCCATGTTCCACGACGAACGCTTTAAGCTGAAGTATACAGTGGATAAACGCGGCCGACCTGTCAACCAAACGTCCACCGAGGACCTCAAGCGCTTCTACAAGATCTCTGACTCCGAGGATTCAGACGAAGAAGAGGAGAACGAGACGAAGGAAGAGCCCGAGGAGGAGAAGACAGTGAAAAAGGCTAACGTGAAACCtcaggatgaggatgaggaagaagagAGCGATGAatctgaggaggaggaagaagccGAGAAGATCCCGAAGTCAAAAGAGgctaagaaaataaaagagccTCTGGTAAAAGGAGTAAGAGTGATAGAAGAAGatgaggatgaggaatctgatgaggaggaggaggaggatgtaGAAGAGGGCCCttctgaagatgaagatgaagaggctGAGGAAGATGACGAGAGTGAGTCAGATGATGACAGCGGACCGGATCTGGCTCGAGGGAAAGGGAACATTGAGACCAGCTctgatgaagatgaggatgatgatgatgagctGGAGGAATATCTGCGGCGTGAGGATGAGGAGATTGAGCACGACTGGGGAGAGATGTGGAAAGATGCTCCACGCGGCGACGACagttCCCGGCGCTTGGCGGTTTGTAACATGAACTGGGACAGACTGAAGGCTAAAGATCTTCTGGCTCTCTTCAGTTCGTTTAAACCCAAAGGAGGCGTGGTCCTGTCTGTGACGATCTATCCGTCCGAGTTCGGGAAGGAGAGGATGAGTGCGGAGCAGACTCAGGGACCGCTGGAGCTCACAAGCCTCCCGGAGAACCCCGACGCTGACACGGAGGAGCAAAGGATCTACCGAGAGAAAGTGCGCGACTATCAGTTCAAGCGTCTGAGGTATTACTACGCCGTGGTGGAGTGCGACTCCGTCGAAACAGCAGCGAAGATTTACGAGGAGTGTGACGGCTACGAGTACGAGAGCAGCTGCTCCATGATCGACCTGCGGTTCATCCCTGACGGCGTGACGTTTGACGACGAGCCCAAAGACAGAGCCACCGATGTGGATTACAGCTCCTACAAACCCAAGCTCTTCACATCCTCGGCCACCACCACAGCCAAGGTCGAGCTGACGTGGGACGAAACGGATCACGACCGGGTCACGGCTCTCTGCAGGAAGTTCAATAAGGACGACCTGTTGGACATGGACTTCAAGGCTTACCTGGCCTCCTCcagcgaggaagaggaggatgaggaagaggcCGAGCAACACACGGAAGCTGAGACGCCCGCTGAGCCACTTCCTGAGGAGAAAAAGGGCAGTAAAGAGAAGAAGAGCACCGAGCAGATCGCTAAATACAGAGAACTCCTGAAGAGCATACAGGACAAAGACAAGGAGCAGGACGACAGCATGGATATGGAGGTCACGTGGGTACCAGGACTGAAGGAAACAACAGAGAAGCTTGTGAAGAAGAAACTGGAGGGCAAAGATCAGCTGACTCCGTGGGAGCAGTACCTGCagaagaaaaaggagaaaaagaaagagaaacggAAAGGAAAGAAGGAAGCAGCGGAGGCGGAGCCTGGGATCAGTGATGATGAACTTCCTGCTGATGTTGACCTCAATGACCCCTTCTTTAAAGAGGAGCTCGGCTCGACTGCATCCCTAAAGAACAAGAAGAACAGGAAGAAGGATGAAGAGCGGACACCAGAAGAGCTGGAAGAGCTGGAGAGACAGAAGGCTGAGATGGAGCTGCTGATGGACGACGAAGAAGACGACAAGCACAAACATTTCAACTACGACAAGATCGTAGAGGAGCAGAACCTGAGCAAGAATAAGAGGAAGAAACTCCTGAAGAGCAAAGCGCCTCTGGAGGAGGACGACTTCCGGGTGGACGTTCACGACTCGCGCTTCCAGGCCATGTACACGTCCCATCTCTACAACCTGGATCCGTCCGACCCGGCCTACAAGAAGACCAAAGCAACCCAGAGCATCATAGAGGAGAAACAGAGACGCAGAGAGGAGCAGCAGCACAGCCAGGAGGAGACGCTGAGGAGCAGAGACGGGGCGTCCTCCTCCAGAGTCATGGACCCTAGCTTGTCACTGCTCGTCAAATCCATCAAGAACAAAACCGAACAGTTTCAGGCACGCAAGAAACAAAAGACGAAGTAACTCGAGAGACTCGCGTCTGGATTCATTGCCGATTTATATAACAGAGTTGGTTTTCTGGAGTCTCTGCGTGTTACTTTAGTGACTAATTTGTGATTGGAGTCCAAAACCAAAATgcgaacctttcataacccttAATAGGGGCGCTTTAAAGGAATTGTTGAAccgaaaatgtacattttgtcatcatttactaacccTATCCAAACTTACGAGTTTCAAAACATCTTCTATCATTCAAAATCTTCAAATGACCTTCTGTGAGCAACTACATTTTCAGTTTCGCCTGAAAACGCGATCGTGCACCCCCGAGTTTTCAGAGAGTCGCATTTAATGAAAACTAGACACAGAGAAGCTGGAGTTAAAGTTAGCTTTATTCATGTTGACACAAACGCCGCCGCACATTCAGAAAAGTCTGTTGGCACTTTCACGGGCACCTCATTTTCTACATAACAGAAGAAACGGGCTTTCTCACTCACGCCGTATATATCAAAATACagctgtaaatgaatgaaaacctCTTACACTTAGAATTCCGGTGAACACCACCAGTGCTCAGAGCATGTAAAAACATCTCCTGGTCCAGGAATTAGTGTAGTGTACATGTAAGAACCGCTTGGGTAGTTCACATCATTAGACCCAATCCAGAAAAGGCACAAATTACAGAGTAGAGTAACACAAGGTTCGATTTGACCAAATAAAGCGGCATCCCAGTCCAGATCACAAGCGCTTGAGAAGTAAAACCAACggaatgaaaatatatactgtgcCACAGTGTTACAAGAAACAGCTACTTTATGAGAAATAGTGCAATTAAGGTTtgacacggacacacacacacacacttacaccaTCTGAAAGAGCTGGAGTGTTGAAG
>XM_043225513.1
CTCTTCGTCTCGCCGTatgcaaaagggggcgtggcttGCAAGCTGTAGCGGAAGTAGTGGAGCATCACGGGTAAACACGTGTGGAGAAGCGCTGTAAAATCGCACGGAAACCTAGTTAGGCTCTTCCAGATCATCACCATGTCCTCCAAAAACAGCGCAAGCGGCGACGACCGCTTCTCGAAGGTCAAGAAAGACCCCCGCTTCTGGGAGATGCCCAGCAGAGAGCACAAAGTCAAAATCGACAAGCGTTTCCGGTCCATGTTCCACGACGAACGCTTTAAGCTGAAGTATACAGTGGATAAACGCGGCCGACCTGTCAACCAAACGTCCACCGAGGACCTCAAGCGCTTCTACAAGATCTCTGACTCCGAGGATTCAGACGAAGAAGAGGAGAACGAGACGAAGGAAGAGCCCGAGGAGGAGAAGACAGTGAAAAAGGCTAACGTGAAACCtcaggatgaggatgaggaagaagagAGCGATGAatctgaggaggaggaagaagccGAGAAGATCCCGAAGTCAAAAGAGgctaagaaaataaaagagccTCTGGTAAAAGGAGTAAGAGTGATAGAAGAAGatgaggatgaggaatctgatgaggaggaggaggaggatgtaGAAGAGGGCCCttctgaagatgaagatgaagaggctGAGGAAGATGACGAGAGTGAGTCAGATGATGACAGCGGACCGGATCTGGCTCGAGGGAAAGGGAACATTGAGACCAGCTctgatgaagatgaggatgatgatgatgagctGGAGGAATATCTGCGGCGTGAGGATGAGGAGATTGAGCACGACTGGGGAGAGATGTGGAAAGATGCTCCACGCGGCGACGACagttCCCGGCGCTTGGCGGTTTGTAACATGAACTGGGACAGACTGAAGGCTAAAGATCTTCTGGCTCTCTTCAGTTCGTTTAAACCCAAAGGAGGCGTGGTCCTGTCTGTGACGATCTATCCGTCCGAGTTCGGGAAGGAGAGGATGAGTGCGGAGCAGACTCAGGGACCGCTGGAGCTCACAAGCCTCCCGGAGAACCCCGACGCTGACACGGAGGAGCAAAGGATCTACCGAGAGAAAGTGCGCGACTATCAGTTCAAGCGTCTGAGGTATTACTACGCCGTGGTGGAGTGCGACTCCGTCGAAACAGCAGCGAAGATTTACGAGGAGTGTGACGGCTACGAGTACGAGAGCAGCTGCTCCATGATCGACCTGCGGTTCATCCCTGACGGCGTGACGTTTGACGACGAGCCCAAAGACAGAGCCACCGATGTGGATTACAGCTCCTACAAACCCAAGCTCTTCACATCCTCGGCCACCACCACAGCCAAGGTCGAGCTGACGTGGGACGAAACGGATCACGACCGGGTCACGGCTCTCTGCAGGAAGTTCAATAAGGACGACCTGTTGGACATGGACTTCAAGGCTTACCTGGCCTCCTCcagcgaggaagaggaggatgaggaagaggcCGAGCAACACACGGAAGCTGAGACGCCCGCTGAGCCACTTCCTGAGGAGAAAAAGGGCAGTAAAGAGAAGAAGAGCACCGAGCAGATCGCTAAATACAGAGAACTCCTGAAGAGCATACAGGACAAAGACAAGGAGCAGGACGACAGCATGGATATGGAGGTCACGTGGGTACCAGGACTGAAGGAAACAACAGAGAAGCTTGTGAAGAAGAAACTGGAGGGCAAAGATCAGCTGACTCCGTGGGAGCAGTACCTGCagaagaaaaaggagaaaaagaaagagaaacggAAAGGAAAGAAGGAAGCAGCGGAGGCGGAGCCTGGGATCAGTGATGATGAACTTCCTGCTGATGTTGACCTCAATGACCCCTTCTTTAAAGAGGAGCTCGGCTCGACTGCATCCCTAAAGAACAAGAAGAACAGGAAGAAGGATGAAGAGCGGACACCAGAAGAGCTGGAAGAGCTGGAGAGACAGAAGGCTGAGATGGAGCTGCTGATGGACGACGAAGAAGACGACAAGCACAAACATTTCAACTACGACAAGATCGTAGAGGAGCAGAACCTGAGCAAGAATAAGAGGAAGAAACTCCTGAAGAGCAAAGCGCCTCTGGAGGAGGACGACTTCCGGGTGGACGTTCACGACTCGCGCTTCCAGGCCATGTACACGTCCCATCTCTACAACCTGGATCCGTCCGACCCGGCCTACAAGAAGACCAAAGCAACCCAGAGCATCATAGAGGAGAAACAGAGACGCAGAGAGGAGCAGCAGCACAGCCAGGAGGAGACGCTGAGGAGCAGAGACGGGGCGTCCTCCTCCAGAGTCATGGACCCTAGCTTGTCACTGCTCGTCAAATCCATCAAGAACAAAACCGAACAGTTTCAGGCACGCAAGAAACAAAAGACGAAGTAACTCGAGAGACTCGCGTCTGGATTCATTGCCGATTTATATAACAGAGTTGGTTTTCTGGAGTCTCTGCGTGTTACTTTAGTGACTAATTTGTGATTGGAGTCCAAAACCAAAATgcgaacctttcataacccttAATAGGGGCGCTTTAAAGGAATTGTTGAAccgaaaatgtacattttgtcatcatttactaacccTATCCAAACTTACGAGTTTCAAAACATCTTCTATCATTCAAAATCTTCAAATGACCTTCTGTGAGCAACTACATTTTCAGTTTCGCCTGAAAACGCGATCGTGCACCCCCGAGTTTTCAGAGAGTCGCATTTAATGAAAACTAGACACAGAGAAGCTGGAGTTAAAGTTAGCTTTATTCATGTTGACACAAACGCCGCCGCACATTCAGAAAAGTCTGTTGGCACTTTCACGGGCACCTCATTTTCTACATAACAGAAGAAACGGGCTTTCTCACTCACGCCGTATATATCAAAATACagctgtaaatgaatgaaaacctCTTACACTTAGAATTCCGGTGAACACCACCAGTGCTCAGAGCATGTAAAAACATCTCCTGGTCCAGGAATTAGTGTAGTGTACATGTAAGAACCGCTTGGGTAGTTCACATCATTAGACCCAATCCAGAAAAGGCACAAATTACAGAGTAGAGTAACACAAGGTTCGATTTGACCAAATAAAGCGGCATCCCAGTCCAGATCACAAGCGCTTGAGAAGTAAAACCAACggaatgaaaatatatactgtgcCACAGTGTTACAAGAAACAGCTACTTTATGAGAAATAGTGCAATTAAGGTTtgacacggacacacacacacacacttacaccaTCTGAAAGAGCTGGAGTGTTGAAG

Function

symbol description
esf1 Predicted to enable RNA binding activity. Acts upstream of or within neural crest cell development; pharyngeal system development; and rRNA processing. Predicted to be located in nucleolus. Is expressed in several structures, including digestive system; head; immature eye; midbrain neural rod; and pectoral fin bud. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog).

NR:

description
ESF1 homolog isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225434.1 False 3254 mRNA 0.50 13 24977040 24984012
XM_043225513.1 True 3268 mRNA 0.50 13 24977040 24984030

Neighbor

gene id symbol gene type direction distance location
jag1a jag1a,LOC107675628,LOC107594417,LOC107747432 coding downstream 25775 24923196 ~ 24951265 (-)
psen2 psen2,LOC107675694,LOC107684264,LOC107757025 coding downstream 74813 24895841 ~ 24902227 (-)
spast LOC107749266,LOC107675648,LOC107757022 coding downstream 85573 24883400 ~ 24891467 (-)
gprin3b LOC107729386,LOC107594421,LOC107675731,LOC107583186,LOC107757021,LOC107684268 coding downstream 164870 24806784 ~ 24812170 (-)
zgc:154142 zgc:154142,LOC107676135,LOC107594422 coding downstream 174615 24785279 ~ 24802425 (-)
LOC122329700 sgms2,LOC107729360,LOC107675923,LOC107594470,LOC107684311,LOC107757011 coding upstream 150866 25134896 ~ 25138647 (-)
LOC122329893 kif16b,LOC107594414,LOC107747412 coding upstream 224747 25208777 ~ 25225402 (-)
spred2a spred2a,LOC107747416,LOC107675542,LOC107757033,LOC107583232 coding upstream 469174 25453204 ~ 25466466 (-)
ppp3r1b PPP3R1,ppp3r1,ppp3r1a,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding upstream 525544 25509574 ~ 25522370 (-)
cnrip1a cnrip1a,LOC107676313,LOC107684253,LOC107594460,LOC107583248,LOC108258529 coding upstream 539337 25523367 ~ 25526442 (-)
G6061 NA non-coding downstream 63572 24911141 ~ 24913468 (-)
G6058 NA non-coding downstream 103499 24872629 ~ 24873541 (-)
LOC122345669 LOC107684322,LOC107676340,LOC107594467,LOC107756997,LOC107583244 non-coding downstream 113666 24840914 ~ 24863374 (-)
G6049 NA non-coding downstream 163517 24813313 ~ 24813523 (-)
G6019 NA non-coding downstream 287344 24689178 ~ 24689696 (-)
G6077 NA non-coding upstream 2954 24986984 ~ 25204897 (-)
G6081 NA non-coding upstream 13622 24997652 ~ 24998787 (-)
G6082 NA non-coding upstream 23878 25007908 ~ 25009573 (-)
G6091 NA non-coding upstream 95966 25079996 ~ 25081855 (-)
G6104 NA non-coding upstream 269367 25253397 ~ 25258307 (-)
G6073 NA other downstream 3669 24972491 ~ 24973371 (-)
G6056 NA other downstream 106575 24868441 ~ 24870465 (-)
LOC122341607 LOC107729348,LOC107676039,LOC107578077,LOC107729356,LOC107594453,LOC107676194,LOC107729349,LOC107706808 other downstream 679449 24291431 ~ 24297591 (-)
atp5md taf5,LOC107676012,LOC107583167,LOC107574147,LOC107684290 other downstream 725801 24193721 ~ 24251239 (-)
si:dkeyp-80c12.8 NA other downstream 755594 24218594 ~ 24221446 (-)
G6074 LOC107583193,LOC107757030,LOC107747412 other upstream 4746 24988776 ~ 24993345 (-)
G6078 kif16b,LOC107747412,LOC107583193 other upstream 10453 24994483 ~ 24995820 (-)
LOC122349000 gstcd,LOC107757010,LOC107676029,LOC107729368,LOC107594450,LOC106610363,LOC107684312 other upstream 40692 25024722 ~ 25063882 (-)
G6085 hadh,LOC107594428,LOC107729339 other upstream 142021 25126051 ~ 25127824 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other upstream 147973 25132003 ~ 25134159 (-)

Expression


Co-expression Network