LOC122329700 (sgms2,LOC107729360,LOC107675923,LOC107594470,LOC107684311,LOC107757011)


Basic Information

Item Value
gene id LOC122329700
gene name sgms2,LOC107729360,LOC107675923,LOC107594470,LOC107684311,LOC107757011
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 25134896 ~ 25138647 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226198.1
AGCCACATCATATGAGAGCTGAAAACGCAGGCCTTTCATTATCGCTGCAGAGAAGAGTGACCTACAGTGCCTTACAGGAGAGCGTCTTGGCAGGAAGTCAGTCATTAGTGGGTAGTTGTGGGTACTCATGGCATCGTCGGACCACCAAGGAAACAAGGACCCCACAAACGCAGATGGGACACCGTCCCCTGGCGCATCTTGCCCCGTCCACAGCCACGCTGCTGAAGAAGCGAAGCGGAACGGCTTGAGGAAAGCGCTGGTCAGACATCGAGACTATGTCAAAATCTCCGTACCCGAAGGAAAAGGCAACCGATTGCCGTCGGAATGGTGGAAGACGTTCATCGCTGTGTTTTATGCCACTTTGAACCTGGTTTTGACCACGGTTATGATCACAGTGGTTCACGAGAGAGTACCGCCCAAGGAGAGCAGCCCACCGCTGCCGGATAAGTTCTTTGACTATATAGACCGCGTACAGTGGGCGTTTACAGTGACTGAGGTCAACGGAATGGTGCTGGTGTCTATATGGTCCATTCAGTTGCTCTTTCATAGATACAAGTAAGAATTAGAGAGACgatatttcttcattttggGCACGTTGTACATGTATAGATGCGTGACCATGTACGTCACCACTCTACCTGTACCTGGCATGCACATGGTCTGTGCACcaaagctCCACGGAGATTCCCAGGCAAAGCTTCAACGTGTCCTGCAGTTGCTCTCTGGTGGTGGATTATCAATCACCGGATCTCATCTGCTGTGCGGCGACTTCCTGTACAGCGGCCACACTGTCATTCTCACGCTCACGTACCTCTTCCTCAAGGAGTATTCTCCTCGTTCTTTCTGGTGGTACCATCTTCTGTGCTGGTTAACGGCTGCTGTGGGGGTCGTGTGTATCCTGGTGGCCCATGAGCACTACAGTGTGGATGTGGTGGTGGCGTATTTCATCACCACCCGACTGTTCTACTGGTATCACACTATGGCTAATCTGCAGACTTTAAAGTGTTCTCCGAACAACTACCTCACTCACACCTGGTGGAACCCTGTGTTTAACTTCTTCGAGAGGAACGTCCAGACCCAAGTGCCCTGTTCTTTCTGCTGGCCAATCACATGGCCGCCCGCCTGTCTGAAGAACCCCTGTAAGAAATATTCTATGGTGCAGAGCAGCCGGGAGGAGTGACGTTATGAACTCAACGCGACGCCTAGACCAACATGtggaaatgttttgtatttcgCTTGTGGCTGTAGCAAAGAACAAAGACTGTTCGGCTGTTGTCGCTAATTACATCTATAATAACATTGGGCTAAACAGTTCAAACTCAATATTATTTGACAAGTCattgttgatatttttacattaatttatattcagTCAATGTGAccattaaataaacacttttataagtacTTGAAGGGCCAGCTTAAAGTGTTAAATGATGGATCTTTAGAGAATCTCTCACTTTCTGTCAGAACAGATCTATCAGTCGGT

Function

symbol description
sgms2 Enables ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Involved in regulation of bone mineralization and sphingomyelin biosynthetic process. Located in Golgi apparatus and plasma membrane. Is integral component of Golgi membrane and integral component of plasma membrane. Implicated in calvarial doughnut lesions with bone fragility.

NR:

description
PREDICTED: phosphatidylcholine:ceramide cholinephosphotransferase 2-like

GO: NA

KEGG:

id description
K04714 SGMS; shingomyelin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226198.1 True 1489 mRNA 0.48 6 25134896 25138647

Neighbor

gene id symbol gene type direction distance location
esf1 esf1,LOC107757029,LOC107747407,LOC107684260,LOC107675607 coding downstream 150866 24977040 ~ 24984030 (-)
jag1a jag1a,LOC107675628,LOC107594417,LOC107747432 coding downstream 183631 24923196 ~ 24951265 (-)
psen2 psen2,LOC107675694,LOC107684264,LOC107757025 coding downstream 232669 24895841 ~ 24902227 (-)
spast LOC107749266,LOC107675648,LOC107757022 coding downstream 243429 24883400 ~ 24891467 (-)
gprin3b LOC107729386,LOC107594421,LOC107675731,LOC107583186,LOC107757021,LOC107684268 coding downstream 322726 24806784 ~ 24812170 (-)
LOC122329893 kif16b,LOC107594414,LOC107747412 coding upstream 70130 25208777 ~ 25225402 (-)
spred2a spred2a,LOC107747416,LOC107675542,LOC107757033,LOC107583232 coding upstream 314557 25453204 ~ 25466466 (-)
ppp3r1b PPP3R1,ppp3r1,ppp3r1a,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding upstream 370927 25509574 ~ 25522370 (-)
cnrip1a cnrip1a,LOC107676313,LOC107684253,LOC107594460,LOC107583248,LOC108258529 coding upstream 384720 25523367 ~ 25526442 (-)
LOC122351449 fbxo48,LOC107747422,LOC107594409,LOC107675512,LOC107583249,LOC107684254 coding upstream 388832 25527479 ~ 25529540 (-)
G6091 NA non-coding downstream 53041 25079996 ~ 25081855 (-)
G6082 NA non-coding downstream 125323 25007908 ~ 25009573 (-)
G6081 NA non-coding downstream 136109 24997652 ~ 24998787 (-)
G6061 NA non-coding downstream 221428 24911141 ~ 24913468 (-)
G6058 NA non-coding downstream 261355 24872629 ~ 24873541 (-)
G6104 NA non-coding upstream 114750 25253397 ~ 25258307 (-)
G6118 NA non-coding upstream 144728 25283375 ~ 25427936 (-)
G6125 NA non-coding upstream 175869 25314516 ~ 25316688 (-)
G6132 NA non-coding upstream 247530 25386177 ~ 25386576 (-)
G6165 NA non-coding upstream 365293 25503940 ~ 25504854 (-)
G6089 cyp2u1,LOC107729355,LOC107583182,LOC107756983,LOC107683164 other downstream 737 25132003 ~ 25134159 (-)
G6085 hadh,LOC107594428,LOC107729339 other downstream 7072 25126051 ~ 25127824 (-)
LOC122349000 gstcd,LOC107757010,LOC107676029,LOC107729368,LOC107594450,LOC106610363,LOC107684312 other downstream 71014 25024722 ~ 25063882 (-)
G6078 kif16b,LOC107747412,LOC107583193 other downstream 139076 24994483 ~ 24995820 (-)
G6074 LOC107583193,LOC107757030,LOC107747412 other downstream 141551 24988776 ~ 24993345 (-)
G6124 actr2,LOC108423375 other upstream 165950 25304597 ~ 25307971 (-)
G6134 ndufaf5,LOC107594462,LOC107594415,LOC107583196,LOC107684300 other upstream 259844 25398491 ~ 25400017 (-)
G6135 ndufaf5,LOC107675590,LOC107594415 other upstream 261737 25400384 ~ 25402355 (-)
prokr1a prokr1a,LOC107594458,LOC107676304,LOC107747445,LOC107757000,LOC108441199 other upstream 409078 25547725 ~ 25556982 (-)
LOC122353196 zgc:136864,c26h19orf53,LOC107598479,LOC107700848,LOC107747197,LOC105901798,LOC106531096 other upstream 575455 25714102 ~ 25715704 (-)

Expression


Co-expression Network