ccdc149b (LOC107748825,LOC107671163,LOC107559643)


Basic Information

Item Value
gene id ccdc149b
gene name LOC107748825,LOC107671163,LOC107559643
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19544865 ~ 19552166 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226831.1
TGCGGTTGGCCGTCACCCCGGCCGGAAATGATGTACGTGATGTTGACGAAACCTGAAACATGCGATCGTGCCGTCCTCGTCGCGACAGATGCTTACGACGTGACAGTTTTCGTAATTGACAGATTCCTTTAAAAGAGCATCGTCGGACGGAAAATGAATCCTTCCAGAAGAAGCGAAAGTGATTGGCAGGGTCTGGTGAACGAGTTCCTGGTTTGCAAGAGAAAGCTGGAGAGTAAGAAGGAGGCACTGCTGATCTTATCAAAAGAACTGGACACCTGCCAGCAGGAAAGGGATCAGTTTAAACTGATGGCAAACCAGCTCCGTGAACGCCACCAAGGGCTCAAGAAAAAGTACAGAGAGCTTATAGATGGCGACCCTTCTCTTCCTCCTGAGAAAAGAAACCAAGTCAATCTGGCCCAGTTACTGAGAGACTCACGGGAACAGAACAAACAGCTGAGCGAGGAGATGAAAGAACTAAAGCAACGTTTAGCGGAGGTGCAGGGAGATAACAAGCTGCTGAGGATGACCATCGCAAAGCAGCGTCTGGGGGACGAGGAGGTGGGGTCTCGTCACTTTCCGGCTCACGAGAGGGAAGATCTCGTTCAGCAGTTAGAAAGAGCTCGAGAGCAGAATGAAGCACTGGAACAAAGCTTAAAGGCAGCCACAGATGAGCTGCAGGACGTGAGAGCAGAGCGCAATGTGTATCAGGAgaaagctcacagactaaacctgGAAATTAACCACATTCTGGGAAGCCATGAGAATCGTATCCTGGATATAGACGCTCTGTGTATGGAGAACAGatatctGCATGAGCGGCTGATGCAGCTTCAGGAGGAGGTCAGCCTCCTCAAATCAAACGTCATGAAGTACAAGAGCGCTTTGGAAAGCAAGAAGAACTGTAAAGTCTACGGCAAGTCCAACAGCAGCGCTCTGACTGGAGTCCTTTCTGCTAAACAAGTACAAGAGCTGTTGCTTTCGGAGGAGAATGGCTGCAGTCTCCCGGTCACTTCTCAGTCTATCAGTGACCTGAAGTCCCTGGCCACTGCTCTGCTGGAGACCATTCATGAAAAGAACATGGTCATTCAGCATCAACGGCAAACCAACAAGATCCTGGGTAACCGGGTTGCAGAACTTGAAAGAAAGTTGAAAACTTTAGAGGTGTCAGGGTTGTGGAGTCTGCCAGGCATCACCTACAATGTGTCTCTCGGACTAGggaGAAGGAAAGCCGTGATTGTCCTGAGTGACTCTCAGCATGTCCAGTCCACTACAGAACAGTCAGTCCATCTGACACCAGAGTCAATGGGAGATGAGGAGATAGTTACAGGAGAAGAGGTGACCGAAGACACGGGACTCAGCACAGATTTCAGCTCAGATGGGTGTCAAGCAGTGGCGGTCGAGTTGAACCAAGAAAGCGATTATTTCAACCGCACGTATTCAACTCTACAATTCAGTAATCCAGAAGAAAGCATCCAGCCTGAGGAGAGCACACAGTGTAAGAGCCTTTCTTGTTGTGACTCCGAGAAGCCCGTGTGTTCTCCTGAGAGGGGATCAGAACAACATGGATGTCAGTCTTTTAACACAGGGGCGTCTTTGAAAGGTTCAGAAGAAGCTGATGTGGAGAGCGATGTTCGTGTCGTTCATTCCGAGGAAGACTTTGATGGTCAAGGTGCATCAGAGGACGGTCGGCCTGTGGCGTCAGAGACCTTGAGCCGTTCTGGATCTGACTCATATACATCTGAACAAACAGAGCGATCGGTCGAAGAAGAAGAAACGGAGAACGCTTCCCTAAACACACATTCTCCTGCTCAAACCTCAGCACACCGGGAATGAGCTTTCACGATGTTAAAAAACTGTGAGAGAAGTTCATTGAAACAACCTCCGTTCATCTAAAATCCCATCAGATAATATAAGCGTTCTGATTCAGAACTATAAACAAAATGTCCAAATAAAAcctattcattatttaaatgaagctaaaaacaaactaaaaagttCACCAGGAGGCAAGCTGAATATTCAAATTAATCGTTATTAAGGTTCAATCCCTGATGACAGCCAATGTATTTCCGAAGGTTCATCAAGAATCTCAAACGAAACCTTAAGATGTGACGTCACTATGATGACGCTAAACCAGCAAGTTTCATTTTTCCTAacattattatacagtattttgaaGACACGTCCTTGCGTATTTTGACTGGTGTATTTTGTGGGCAGAACATGACAATTTCGACAAGTTTAACCTTCTTTTTACACTGAGTCAAGTATAACACGCGATTCCTGTTCCATATGCAAAAGCTAAAggttcttcttttttcttcgTTTTTGACACTGAATGTCACAATTCCAGCCACTCTCAGTTATTctatcttatttattatttgtgatcTTGATGATTGTAATCGTGTTTGATCCGTAAAGGTTGGTGTAAAGTCCTTCTCCGTAGATCACCTAATGTTACACTGTAATATAGTGTAGAATTGGAACAATCATCAGCTCCAAagcttaaattatatttaattacgcACAAAAGCAAAGCATCGCAATACACCAGCCATTTAGTTTTACACTCTGCTGctatattattgatttattattgcaTCAGTTTATTTGGTTTGCTTAGACTTGACTTGTCGGTTGCGCCAAAACTATTTGTAATGATAGAAGGATTATCTTGTTGTATATGTCCTGAAGTCATTGAAATAAAGAGTAACATTCTCCATTACAAA
>XM_043227587.1
TGCGGTTGGCCGTCACCCCGGCCGGAAATGATGTACGTGATGTTGACGAAACCTGAAACATGCGATCGTGCCGTCCTCGTCGCGACAGATGCTTACGACGTGACAGTTTTCGTAATTGACAGATTCCTTTAAAAGAGCATCGTCGGACGGAAAATGAATCCTTCCAGAAGAAGCGAAAGTGATTGGCAGGGTCTGGTGAACGAGTTCCTGGTTTGCAAGAGAAAGCTGGAGAGTAAGAAGGAGGCACTGCTGATCTTATCAAAAGAACTGGACACCTGCCAGCAGGAAAGGGATCAGTTTAAACTGATGGCAAACCAGCTCCGTGAACGCCACCAAGGGCTCAAGAAAAAGTACAGAGAGCTTATAGATGGCGACCCTTCTCTTCCTCCTGAGAAAAGAAACCAAGTCAATCTGGCCCAGTTACTGAGAGACTCACGGGAACAGAACAAACAGCTGAGCGAGGAGATGAAAGAACTAAAGCAACGTTTAGCGGAGGTGCAGGGAGATAACAAGCTGCTGAGGATGACCATCGCAAAGCAGCGTCTGGGGGACGAGGAGGTGGGGTCTCGTCACTTTCCGGCTCACGAGAGGGAAGATCTCGTTCAGCAGTTAGAAAGAGCTCGAGAGCAGAATGAAGCACTGGAACAAAGCTTAAAGGCAGCCACAGATGAGCTGCAGGACGTGAGAGCAGAGCGCAATGTGTATCAGGAgaaagctcacagactaaacctgGAAATTAACCACATTCTGGGAAGCCATGAGAATCGTATCCTGGATATAGACGCTCTGTGTATGGAGAACAGatatctGCATGAGCGGCTGATGCAGCTTCAGGAGGAGGTCAGCCTCCTCAAATCAAACGTCATGAAGTACAAGAGCGCTTTGGAAAGCAAGAAGAACTGTAAAGTCTACGGCAAGTCCAACAGCAGCGCTCTGACTGGAGTCCTTTCTGCTAAACAAGTACAAGAGCTGTTGCTTTCGGAGGAGAATGGCTGCAGTCTCCCGGTCACTTCTCAGTCTATCAGTGACCTGAAGTCCCTGGCCACTGCTCTGCTGGAGACCATTCATGAAAAGAACATGGTCATTCAGCATCAACGGCAAACCAACAAGATCCTGGGTAACCGGGTTGCAGAACTTGAAAGAAAGTTGAAAACTTTAGAGGTGTCAGGGTTGTGGAGTCTGCCAGGAAGGAAAGCCGTGATTGTCCTGAGTGACTCTCAGCATGTCCAGTCCACTACAGAACAGTCAGTCCATCTGACACCAGAGTCAATGGGAGATGAGGAGATAGTTACAGGAGAAGAGGTGACCGAAGACACGGGACTCAGCACAGATTTCAGCTCAGATGGGTGTCAAGCAGTGGCGGTCGAGTTGAACCAAGAAAGCGATTATTTCAACCGCACGTATTCAACTCTACAATTCAGTAATCCAGAAGAAAGCATCCAGCCTGAGGAGAGCACACAGTGTAAGAGCCTTTCTTGTTGTGACTCCGAGAAGCCCGTGTGTTCTCCTGAGAGGGGATCAGAACAACATGGATGTCAGTCTTTTAACACAGGGGCGTCTTTGAAAGGTTCAGAAGAAGCTGATGTGGAGAGCGATGTTCGTGTCGTTCATTCCGAGGAAGACTTTGATGGTCAAGGTGCATCAGAGGACGGTCGGCCTGTGGCGTCAGAGACCTTGAGCCGTTCTGGATCTGACTCATATACATCTGAACAAACAGAGCGATCGGTCGAAGAAGAAGAAACGGAGAACGCTTCCCTAAACACACATTCTCCTGCTCAAACCTCAGCACACCGGGAATGAGCTTTCACGATGTTAAAAAACTGTGAGAGAAGTTCATTGAAACAACCTCCGTTCATCTAAAATCCCATCAGATAATATAAGCGTTCTGATTCAGAACTATAAACAAAATGTCCAAATAAAAcctattcattatttaaatgaagctaaaaacaaactaaaaagttCACCAGGAGGCAAGCTGAATATTCAAATTAATCGTTATTAAGGTTCAATCCCTGATGACAGCCAATGTATTTCCGAAGGTTCATCAAGAATCTCAAACGAAACCTTAAGATGTGACGTCACTATGATGACGCTAAACCAGCAAGTTTCATTTTTCCTAacattattatacagtattttgaaGACACGTCCTTGCGTATTTTGACTGGTGTATTTTGTGGGCAGAACATGACAATTTCGACAAGTTTAACCTTCTTTTTACACTGAGTCAAGTATAACACGCGATTCCTGTTCCATATGCAAAAGCTAAAggttcttcttttttcttcgTTTTTGACACTGAATGTCACAATTCCAGCCACTCTCAGTTATTctatcttatttattatttgtgatcTTGATGATTGTAATCGTGTTTGATCCGTAAAGGTTGGTGTAAAGTCCTTCTCCGTAGATCACCTAATGTTACACTGTAATATAGTGTAGAATTGGAACAATCATCAGCTCCAAagcttaaattatatttaattacgcACAAAAGCAAAGCATCGCAATACACCAGCCATTTAGTTTTACACTCTGCTGctatattattgatttattattgcaTCAGTTTATTTGGTTTGCTTAGACTTGACTTGTCGGTTGCGCCAAAACTATTTGTAATGATAGAAGGATTATCTTGTTGTATATGTCCTGAAGTCATTGAAATAAAGAGTAACATTCTCCATTACAAA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 149-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226831.1 True 2732 mRNA 0.44 13 19544865 19552166
XM_043227587.1 False 2699 mRNA 0.44 12 19544865 19552166

Neighbor

gene id symbol gene type direction distance location
lgi2b lgi2b,LOC107550949,LOC107671185,LOC107748826 coding upstream 487 19539331 ~ 19544378 (+)
LOC122331797 aip,LOC107748827,LOC107737096 coding upstream 8962 19530387 ~ 19535903 (+)
sod3b LOC107671542,LOC107748835,LOC107574198 coding upstream 18279 19524848 ~ 19526586 (+)
irf2a irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969 coding upstream 75436 19464300 ~ 19469429 (+)
tenm3 LOC107737101,LOC107670970 coding upstream 110143 19191093 ~ 19434722 (+)
si:ch211-113e8.11 LOC107671245,LOC107552526,LOC107748836,LOC107559641 coding downstream 34409 19586575 ~ 19589162 (+)
LOC122348841 LOC107559639,LOC107551053,LOC107552058 coding downstream 45949 19598115 ~ 19603201 (+)
LOC122353518 NA coding downstream 54456 19606622 ~ 19613071 (+)
faah2a faah2a,LOC107551107,LOC107712025,LOC107737091,LOC107559634,LOC107674256,LOC108263609,LOC108434801 coding downstream 77590 19629756 ~ 19635405 (+)
zgc:56493 zgc:56493,LOC107674259,LOC107737089,LOC107559635,LOC107671288,LOC107551115,LOC103040975,LOC108444223 coding downstream 85139 19637305 ~ 19640516 (+)
G4531 NA non-coding upstream 20085 19524546 ~ 19524780 (+)
LOC122333031 NA non-coding upstream 368038 18993761 ~ 19176827 (+)
G4361 NA non-coding upstream 797112 18747234 ~ 18747753 (+)
G4360 glra3,LOC102780741,LOC101174559,LOC102299625 non-coding upstream 821570 18723075 ~ 18723295 (+)
G4356 NA non-coding upstream 829634 18714947 ~ 18715231 (+)
G4553 NA non-coding downstream 22245 19574411 ~ 19574760 (+)
G4579 NA non-coding downstream 190996 19743162 ~ 19778083 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding downstream 418610 19970776 ~ 19972265 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding downstream 426803 19978969 ~ 19980622 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding downstream 430638 19982804 ~ 19983127 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 22466 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1260221 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 1646319 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 1934120 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 3474950 16064271 ~ 16069915 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 163387 19715553 ~ 19777050 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 590295 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 689652 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1769296 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 2038711 21590877 ~ 21620592 (+)

Expression


Co-expression Network