tyrp1b (tyrp1b,LOC107656198,LOC107551586,LOC107591533,LOC107702360)


Basic Information

Item Value
gene id tyrp1b
gene name tyrp1b,LOC107656198,LOC107551586,LOC107591533,LOC107702360
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 11599279 ~ 11607198 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228466.1
GGGGGGCACTACAGTACAGGAGAAAcacagagtgtgtgagagaaagagttgGGCAGAAAAGAGAGAACGGATGATATAAGGATGTGGAAGAGTGTGTGTTTAGCGCTAATGTGCATTGTGCTGACGGAGGCTCAGTTCCCACGTCAGTGTGTGACACCAGAAGGTCTGCGGAGTGGCACCTGCTGCCCATCACCTACAGGACTGCCCAATGATGAGTGTGGATCCAGTACCGGGAGAGGTCAGTGCGTGTTAATTGCTGCTGACCGCCGTCCGCACGGGCCTCAGTATCCTCACGACGGGCGGGATGACAGAGAGCGATGGCCACTGAGGTTTTTTAACAGGACCTGCCAGTGTAACGGAAACTTCAGTGGATTTAACTGTGGGCGATGCCGACACGGCCTGACAGGGCCGAACTGCAATCAAAGAGCCTCCGTGGTGCGACGTAACGTCATGCAGATGTCTGCAAATGAGAAAAGGGCCTTTGTGAATGCTCTGGACCAGGCTAAAAGAACCGTCCATCCTGACCTGGTCATCTGTACCCGTCGCTATCAGGAGATTTTGGGTCCTGATGGAGCGAGTGTACAGTGTGAGAACATCACCATTTATAATTACTTCGTCTGGACCCACTACTATTCGGTCAGTAAGACTTACATGGGACCAGGCCAGCAGAGCTTCGGAGGTGTGGATTTCTCTCACGAAGGACCAGGATTTGTTACATGGCACCGGTTCCACCTGTTACATCTGGAGAGAGACATGCAGGACATGCTGGGGGACCCGTCGTTTGCCCTGCCGTACTGGAACTTTGCGATAGGAGGCAGCGAGTGTGATATCTGCACTGATGACCTGCTGGGAGCCAGAAGCAGCTTTGACACCAATGGCATCAGTTCCAACTCTGTGTTCTCTCAGTGGAGAGTCATCTGTGAGAGTGTGGAGGAGTATGAGACACTGGGGACCATCTGCAACAGTTCAGAGACAAATCCAATCAGAAGAAACCCTGCTGGTAATGTGGCTCGACCCATGGTTCAAAGATTACCAGAACAACAGGACATCATTGACTGCCTGGAGCTGAACACTTTTGACACGCCGCCATATTACTCGACGTCTTCTCAGAGCTTCAGGAACACTATTGAGGGTTACAGCGCTCCCCAGGGAAACTATGACCCAGTAGTGAGGAGTCTGCACAACCTGGCTCATTTGTTTCTCAATGGCACAGGTGGACAGACTCACCTGTCACCAAACGACCCCATCTTTGTCCTGCTTCACACATTCACTGATGCCATCTTTGATGAATGGCTTCAGAGACACACTGCTGCAGGCACAGTGATCTATCCTGAGGAAAACGCTCCAATTGGGCACAACAGAGCGTTCAATATGGTTCCTTTTTGGCCACCGGTcagaaatgctgaaatgtttgtCACAGCCCCAGAAAACCTGGGCTACACCTATGAGGTTCAATGGCCAACTCGGTCATACACCATTTCAGAGATCATCACCATAGCCATCGTTGCCGTGGTGCTTGTCGGTGTTGTGGTGGGCGGAGTCATCGGGTGTGCTGTTCGGGCACGCTCTTATCGCTCAGCTGAGGGCCTGGAGCCACTGCTAGGGGAACAGTTCAGGCGTTACTCAGAGGATGAGCGGCATGCTTCTCAGTCTGTGGTGTgattgagaaaacaaaaaaatatcttaaatgtttttattttgttgcactGTGCATCCACACTCTAGGCCTACTGATGGAGcctgaattatgaattattagaaTTCAAAAGCATTGTAAGTTTTATTGACACATGGGCTTCATTTATGACTATTTATTATCAGATTTTTCATGTTCATtgagacactgaaaacacagtCATATATGCCTATAAAACACATTGAATGTgtcatttaaagttaatatgCTGCTTATGAATGCCCTGTGAACACATGACCTAAGTTTATTGTACAGTGTGACCTATTTTATATTActctgatataaaaaaaacattcagaattctttaaggtttgatttttgtgtttatttttacaaagcAGACTATTTAGCAGCAACTAAAAACAGGCATCTTAAAGAGtttcaacattaatatatataaaaaactaaattgtatatatactgtattaaattattatatataatgtactaATTTGTTTTTCAGGGGGGAAAAACTTGGCCGGGTTACCAtaaattgaaatgaatgtttcttgTATTGTCCATACAAAGACATGTGACATGGTTTAATGTAATGCCATAATCGTGCTAtgattaataatcataatccaTCGGAACAAGTTTCCAGAATAAGAAGTGTCTCGTGGTAAAATAAACCAGGACAACATCCAGACCCTCACAAataat

Function

symbol description
tyrp1b Predicted to enable oxidoreductase activity. Acts upstream of or within several processes, including melanosome organization; response to thyroid hormone; and retinal pigment epithelium development. Predicted to be located in melanosome membrane. Predicted to be integral component of membrane. Predicted to be active in melanosome. Is expressed in several structures, including eye; hatching gland; immature eye; melanoblast; and pigment cell. Human ortholog(s) of this gene implicated in oculocutaneous albinism; oculocutaneous albinism type III; and pigmentation disease. Orthologous to human TYRP1 (tyrosinase related protein 1).

NR:

description
PREDICTED: 5,6-dihydroxyindole-2-carboxylic acid oxidase-like

GO:

id name namespace
GO:0042438 melanin biosynthetic process biological_process
GO:0032438 melanosome organization biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0033162 melanosome membrane cellular_component
GO:0016716 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005507 copper ion binding molecular_function

KEGG:

id description
K00506 TYRP1; tyrosinase-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228466.1 True 2359 mRNA 0.46 8 11599279 11607198

Neighbor

gene id symbol gene type direction distance location
ptpn9b LOC107551593,LOC107746013,LOC107702357,LOC107754144,LOC107591531 coding upstream 83593 11498583 ~ 11515686 (+)
exosc9 exosc9,LOC107656918,LOC107746036,LOC107591532,LOC107702358 coding upstream 101170 11494289 ~ 11498109 (+)
limch1a LOC107754143,LOC107656319,LOC107591530,LOC107746015,LOC107702273,LOC107551594 coding upstream 109701 11446738 ~ 11489578 (+)
rnf38 rnf38,LOC107656328,LOC107591527,LOC107754141,LOC107702356,LOC107551561 coding upstream 155814 11417077 ~ 11443465 (+)
slc25a51a slc25a51a,LOC107551570,LOC107754139,LOC107656936,LOC107746048,LOC107702292,LOC107591528 coding upstream 198029 11396632 ~ 11401250 (+)
clockb LOC107656111,LOC107591535,LOC107702364,LOC107754154 coding downstream 35321 11642519 ~ 11654574 (+)
clrn2 clrn2,LOC107746045,LOC107702302,LOC107754181,LOC107551567,LOC107591582,LOC107656264 coding downstream 67802 11675000 ~ 11676787 (+)
exoc1l si:dkey-245p14.4,LOC107591538,LOC107754188,LOC107551572,LOC107656282,LOC107746044,LOC107702277 coding downstream 74958 11682156 ~ 11683862 (+)
smc2 smc2,LOC107656012,LOC107702366 coding downstream 77156 11684354 ~ 11693285 (+)
LOC122352858 NA coding downstream 122760 11729958 ~ 11731028 (+)
G2472 NA non-coding upstream 214266 11383797 ~ 11385013 (+)
G2468 NA non-coding upstream 215892 11383031 ~ 11383387 (+)
G2454 NA non-coding upstream 247622 11350900 ~ 11351657 (+)
G2449 NA non-coding upstream 257531 11339295 ~ 11341748 (+)
G2430 NA non-coding upstream 283925 11310593 ~ 11315354 (+)
G2511 NA non-coding downstream 26728 11633926 ~ 11634160 (+)
G2512 NA non-coding downstream 28290 11635488 ~ 11635889 (+)
G2518 NA non-coding downstream 70885 11678083 ~ 11678450 (+)
G2623 NA non-coding downstream 131786 11738984 ~ 11745961 (+)
G2625 NA non-coding downstream 137678 11744876 ~ 11763334 (+)
LOC122347856 cpe,LOC107745061,LOC107548348,LOC107591555,LOC107702282,LOC107750458 other upstream 617923 10844956 ~ 10981356 (+)
tlr3 tlr3,LOC107754132,LOC107562740,LOC107656973,LOC107746023,LOC107702346 other upstream 1109195 10483640 ~ 10490084 (+)
G2253 NA other upstream 1201239 10397373 ~ 10398040 (+)
fat1a fat1,fat1a,LOC107656821,LOC107702333 other upstream 1264077 10256662 ~ 10335202 (+)
G2230 NA other upstream 1353701 10245157 ~ 10245578 (+)
fbxo10 fbxo10,si:dkey-245p14.2,LOC107656048,LOC107702368,LOC107754157,LOC107591540,LOC107750413 other downstream 104742 11711940 ~ 11724900 (+)
tmem192 tmem192,LOC107754158,LOC107551580,LOC107656254,LOC107591541,LOC107702369,LOC107750450 other downstream 166758 11773956 ~ 11783070 (+)
LOC122350793 zbtb5,LOC107656143,LOC107702373,LOC107591545 other downstream 230408 11837606 ~ 11844060 (+)
kdm4c kdm4c,LOC107702398,LOC107548355,LOC107570226,LOC107655842,LOC107750465,LOC107709452 other downstream 1037481 12644679 ~ 12658507 (+)
dnah6 dnah6,LOC106610484 other downstream 1052064 12659262 ~ 12724458 (+)

Expression


Co-expression Network