lgi2b (lgi2b,LOC107550949,LOC107671185,LOC107748826)


Basic Information

Item Value
gene id lgi2b
gene name lgi2b,LOC107550949,LOC107671185,LOC107748826
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 19539331 ~ 19544378 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043228780.1
atttactaagtTATTTATAGAACGGCATATAATGGCATGGCGTGAAGAAGAACGCCGGATTAAAAGGATAAAACCAGTGAATAAAGCATTGTTTGCCAGCATGCAAGTTAATGCAACTTATGCAAGTTAGCACTACTGGTGAGATGCACAGTGCAAAATACATTAAACGACGATGCACGATgtacataaaaattaaatatcaacatGCAGATGTTTGTTGAACACCCTGACAGCTGTTTAAAGCAAAGTGTTGTTTAATCGggctggttttttttttgctgttagtTATTTTAGGTACTGGGTAAGATGGATCAATTGTAATCTTTTTATTGGTGCATTAGAGCTGCTAAAAAGAAGATCAGTATCAGAGTCCTTTCTGTGCCATACTGATGGACACGTTAACAATTTTCACAGTGGCTGTGTAAAAACAGACTAAACTGCTGACTGGCTTTCAGCTTTCCTTAATTGTCTGATGACCCTGGAGTTTTTGATCAGTAGGCCTATTTCTGATGAGGTGGTATGTAttgatttgctgttttttttttcttcctatgCAGTATAGGTACGCTACCTATGAACTTGCAGTCTGTAATgctcatttgttttctgttgatGCACTGGGAGTTCGGTCCGCAGGAAAACCAGTTGAAAACCACTCATGCACATGTACCTCAGCTGCCTAAATCTGACACATTGCATGAGTGCAGGCTATTTCACCGTCATCAATTTAAGCACCTCCCCCAGTCACATATAGACGGAAAGCACTTACATGCTGAAATCAGATCTGCTTCTAAATGATTAATGCTATGCATACTGTACTAGAGTCCATATTTTTGCAGtcatatattgtttattacaGGCTGCCAGAGAAATCGTTGTAACTTATGCAGCATCACCTATTATAATCTGTAGGGAAATATACAAAGTGAACACAGCTTGAGCTCACATTAATGTAAATTTAGGCCtgcagtaaatataaaatgcattcagtgACTACTGATAAACAAGACAGAAGCCATTCATTCAAAGATGATCACAgtttccacttttttttcacGTAAACAGAAGAAGACTGACATCAATTTTGCTGATATGACATtaacttatttcagttaacacTAAAGTGTAGCTAAACAGAAAAAGGCATGGTGGAAGCGCGttttaaaatcatcaaaagGCAAGCACAACCGCAGCAAGCAGCCCACTttgagctttatttatttatttatttcgcgCTCTCGTGGTGCCTCCTCTGATGGGACAGTCTAAAACACTGACTGCATCAGAGCCGCTGCTGATCCTCGACTCATTCGCTGCTGACTGACCGGAGAGCGCCTGCCTTCGACTCGCAGCTTCACAGCCATGGATCTCACGAACGACAAACCGTCTTCCATCCGAAAGCGCCTTTTGGTAACTTTGCTGCTCGTTTGTTCGTTTCAAGCGTCCCGATCAAAGCGAGTATTCAAATGTCCTTCAGGATGCACTTGCACGACGGATTCAATCATCTGCGTGGGTTCGTCTCTCCTCCCACGGACTGTACCGAGCGACATCAACTCTCTGAGTATTGTCAATTGCAGTTTCCCAGAAATCAAGGAGGCTATGTTCTCGCTCATGCCCTCACTGCAGTTACTtcTCCTTAGTTCTAATGCGTTTTCTGAAATCAAGGAGGATGCGTTCTCAGGGCTTCCTCATCTTGAGTATTTATTTATTGAAGGGAACAAAATTGAAGAGATAAACAAATATGCCTTCAGAGGTCTTCGTGATGTTACACATCTATCATTAgcaaacaacaatttaaaaacactacCCAGGGGTCTCTTTTCTGATCTGCGCTCTTTGATTGAACTAGATCTACGAGGGAACACGTTCCATTGCGACTGTGAGTCCATGTGGCTGATGCTGTGGCTGAAACGATCCAATGCCACAATCTCTGATGTTTACTGTGCCAGTCCACCTGGCATGAAGGGCGTCCCATTAAAGGATGTCCCAGAAAAACACAGCAAGTGTGTCTCCACCGATTTTGTGCAGCACCAAATAGTGAATACTCAATCAATGTCAGCAGACATCTTCTCTCACAAAGATGATATATATGTGGCTATGGCAGTTCCAAATTCAGACAGCTGCATAATCATGGAATGGGATCACATTGAGACTAAATTCAGGCCTTTTGATAACATCACAGgTCGGTCCGTTGTTGGATGCCGGTCTGTTCTGATCAACGAGCAGGCATTTGTCATTGTCTCCCAACTCTTCGACGGTTCCCTTGTCTACAAATATGACCAAGCACAGAATAAATTCACCAAGTTTCAGGCGGTCGAAATGCTCAATGTGTCCAAGCCGAATGACATCGAAGTCTTCCAGATTGGAGATGACTGGTTCTTCCTAATTGTGGACAGTTCCAAGGCTGGAATGACAACTCTGTTTAAGTGGAACGACACTGGTTTCTACCCGTATCAGTTCCTTCATGAATGGTTTCGTGACACTGACGCTGAGTTTTTTGATTTGGACGGCAAATCTGTTCTTATCCTTGTGAGCCGCTCCCAGGTTCCTGTTATCTACCAGTGGAACAAGAGCACCCAGAAGTTTGTTCTCCATCACGAGATAGCGAATATGGACGACATTGTCAGCGTGAAGGCCTTTAGAATAAACGATGTTCCCTACCTTGCGCTTGCCTGCTACATCGGTGACTCCAAAGTCATGAAGTGGATGGGGAAACACTTCGAAGAAATACAGGGCTTGCCTTCACGGGGCGCCACAGTGTTACAGCCAATCAAGTTCAAAGACCAGCACTATTTGATTCTGAGCAGCGATTATTCCTTCTCCCAGATCTTCAGGTGGGATGAGGAAAACCAGAAGTTTAGCAAGTTCAGGGATGTGTACGTTCAGTGGCCACGCTCCTTCACAGCACTGTCCACAGACCATCGTGATTTTGTGCTGGCCACCAGCTTTAAAGGCAAAACGAAGGTCTTTGAGCACGTTTCAGTGGATTATAGCAAATGAGGCATATGCTGTTATTCATTGCATCTgggtaaatgctaaaataaaactctgttCTTCAATATATGCATACAAATAACcataatatttatgaatgtaaTGTTTCGTCAACAAAAAGGCCAAAACCAGTGCACATGCCTATCTTCTGTCTTGCAATAGCTATTTATGCAACATTTTCTATAAAGGGTTAAACCAACAATCCTCTGCTGCTTAATTCATTCAGACCTTCAGAAAATACCTGACTGTTTGATTATATCAGGGcccttttaattaatttctttgtgaTATATCAGGTTCACCAAAGGTGCTCCGGCTTCAATCCAAAAGACTGTGGACTTGTCGGCTTCAAGCTAATTTATCCTAACGAACTGGTTTGACTTTATGCAAGCATGTTTTTGATGCTGAGTAGTAATAATATTCAATAGAGACCCTCCGTGTTATTGCCTTTGATGAATGGAAGtcttagatttttattttttttttaacaatggatGATCCTTTATTACCGTAGCTGGCCAAGGATTGTACTGGATGtacttttgaaaatatattattgataataaataaaacagcatcttCTATtcaa

Function

symbol description
lgi2b Predicted to be involved in inhibitory synapse assembly. Predicted to be located in extracellular region. Is expressed in trigeminal ganglion. Orthologous to human LGI2 (leucine rich repeat LGI family member 2).

NR:

description
PREDICTED: leucine-rich repeat LGI family member 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043228780.1 True 3583 mRNA 0.41 8 19539331 19544378

Neighbor

gene id symbol gene type direction distance location
LOC122331797 aip,LOC107748827,LOC107737096 coding upstream 3428 19530387 ~ 19535903 (+)
sod3b LOC107671542,LOC107748835,LOC107574198 coding upstream 12745 19524848 ~ 19526586 (+)
irf2a irf2a,LOC107671024,LOC107550872,LOC107748823,LOC107559652,LOC107737100,LOC107684969 coding upstream 69902 19464300 ~ 19469429 (+)
tenm3 LOC107737101,LOC107670970 coding upstream 104609 19191093 ~ 19434722 (+)
spcs3 spcs3,LOC107752235,LOC107670941,LOC107550835,LOC107737105,LOC107676690,LOC107558782 coding upstream 666483 18868682 ~ 18872848 (+)
ccdc149b LOC107748825,LOC107671163,LOC107559643 coding downstream 487 19544865 ~ 19552166 (+)
si:ch211-113e8.11 LOC107671245,LOC107552526,LOC107748836,LOC107559641 coding downstream 42197 19586575 ~ 19589162 (+)
LOC122348841 LOC107559639,LOC107551053,LOC107552058 coding downstream 53737 19598115 ~ 19603201 (+)
LOC122353518 NA coding downstream 62244 19606622 ~ 19613071 (+)
faah2a faah2a,LOC107551107,LOC107712025,LOC107737091,LOC107559634,LOC107674256,LOC108263609,LOC108434801 coding downstream 85378 19629756 ~ 19635405 (+)
G4531 NA non-coding upstream 14551 19524546 ~ 19524780 (+)
LOC122333031 NA non-coding upstream 362504 18993761 ~ 19176827 (+)
G4361 NA non-coding upstream 791578 18747234 ~ 18747753 (+)
G4360 glra3,LOC102780741,LOC101174559,LOC102299625 non-coding upstream 816036 18723075 ~ 18723295 (+)
G4356 NA non-coding upstream 824100 18714947 ~ 18715231 (+)
G4553 NA non-coding downstream 30033 19574411 ~ 19574760 (+)
G4579 NA non-coding downstream 198784 19743162 ~ 19778083 (+)
G4677 dok7,LOC107749932,LOC107674231,LOC107552150,LOC107714234,LOC107679881 non-coding downstream 426398 19970776 ~ 19972265 (+)
G4678 dok7,LOC107714234,LOC107674231,LOC107679881,LOC107749932 non-coding downstream 434591 19978969 ~ 19980622 (+)
G4679 dok7,LOC107552150,LOC107749932,LOC107679881,LOC107674231 non-coding downstream 438426 19982804 ~ 19983127 (+)
G4528 ing2,LOC107671086,LOC107550937,LOC107748834,LOC107579959,LOC107737097,LOC107684977 other upstream 16932 19521084 ~ 19522399 (+)
dclk2a LOC107550694,LOC107598728,LOC107742539,LOC107670743,LOC107654992 other upstream 1254687 18247250 ~ 18284644 (+)
lsm6 lsm6 other upstream 1640785 17896535 ~ 17898546 (+)
gab1 gab1,LOC107725185,LOC107734574,LOC107684448 other upstream 1928586 17551473 ~ 17610745 (+)
LOC122348759 raph1b,LOC107654246,LOC107707841,LOC107719733,LOC107705038 other upstream 3469416 16064271 ~ 16069915 (+)
scoca scoca,scoc,LOC107671340,LOC107712029,LOC107674238,LOC107737083,LOC107556533 other downstream 171175 19715553 ~ 19777050 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other downstream 598083 20142461 ~ 20145856 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other downstream 697440 20241818 ~ 20243349 (+)
LOC122348864 ctnna2,LOC107706127 other downstream 1777084 21321462 ~ 21361440 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other downstream 2046499 21590877 ~ 21620592 (+)

Expression


Co-expression Network