cfap58 (cfap58,LOC107746299,LOC107583211,LOC107659560)


Basic Information

Item Value
gene id cfap58
gene name cfap58,LOC107746299,LOC107583211,LOC107659560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23205389 ~ 23276768 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043232697.1
AAACAGTGTCGTGCGTGTTGTTAAAGCAAAACACGGATATTATGTGTGTGACAGTTtgctaaatacaaaaacaacaacatcttgCTGGGTTTTAGAGAGAAAAGTCAGACGACAGCAATGGAGACAGAGGACAGCACCTTTGAAACCTTGGAAAAAGACATCCAGGAGGTTTTGAATGAGTTATTAGGTGACGAAAAATTTGAGAAGTTCCGCGTGGAATATGAGAAGGTTGCAAAAGCTCTGCGGAAGTCTCACGACAACGAAAAGAGGCTGATGTCTAAATGCAGGGAGCTGAACGCGGAGATAATGTCCAACGCTGTCAAAGTATCCACAGCCATGAAACTAGCTGATGAAGATCAAGCCACAATCACCTctcttaaaatgGAAATTGACAAGGCCTGGAAAATGGTTGAAGCTTCACACGCGAAGGAGTTGCAGGCAAAAGAAACAATACTGAAACTAAAGGAAGAAATAACCTGTCTCAACAAGCTCATTGAAAAAGGAGCTGGAGTTTCTGAGGGCCAAGAATACAGCGTTGGCGATCTGTTAAAGATCAAAGAGGAATTGACCAAGCAGAGAGACACTCTGCAGTCGGAGGTGGTGACACTCCAGGAGAACCTCACTAAAGCCACTGATGCTCAGCAGGAGATAGAGGCTGAGAAGAACAAAGCGGTGGACACAATTGCTCagctcCAGCAGGACATCCAAGTGCGTCAGAATGAGATTCATCGGGAAACCAGGAGGAAGGAGAAGTTGGAAAAAGAAGTAAAGCAGCTTCAAACTGACCTGGAGTCCAAACAATCAGATATTAAATCACTGACTCAGCAGAGTCAGCGTCTGCAGGAGGATCAGCAGAAACTGGAACAACAGCTCCAGGAACACAAAATTATAAATGAGAAAACCAGTAAAGAAATGGAACAACTCCAACATCGAAACACTAAACTACAGCAGGATTATGAACAAAGTGGCATCAGCCTAGAGCAACTCTCCCAACAGAACCAACAGAGAGCATCGGACCTGAAgATGAAAGAAGAGGAAGTAACCCAGCTGAAACAGGAGATCACTAAACTAAGCAAAATGAGAGAAGGGGTGCAGAGGAGATTCAGACAGATGGAGGAACAGAAAGTGGAGGTGGAGAACCAGAGGGAAACACTCAAGAATCAGATCACTGGACTGGATAGAgAAATGGAGACTGCAAAAAAGCAGATGGATGTGGACAAGAAGGCTATAGATGAACTGGTGCGGGAGAGGGACATCCTGAACAAGAATATGATCAAGGCGGCCAATGAAACGGACAAACAGCAGACCATTGTTAAGTTACACGAGCAGTCAAAGAAGTCTCTGGAACAGGAGATTTTAAACTACAGGGACGAAGCCCAGAAACAGCGAAAGATCATCTACCAgctggagaaagagagggatCGCTACATAAACGAGGCCAGTGAGCTCACCAAGAAGGTTCTTGAGAATATTGAGGACATTAAACTGAAGGAGATGCAGATATTTGAGTATAAGAAGAGAATCGCAGAAGCTGAAACGAAACTGAAGCAGCAGCAGAATCTCTACGAGGACGTCAGGACGGAGAGGAACCTCTTTAGCAAGAACCTGATTGAGGCCAAGGATCAGAACGCTGAGATGAAACGCAAGGTGAAGATCGTGAACCACATGTTCGAACAGCTAAAAGATGAAATCACCACAAAAGAGGTGGCTCTAGACAAGGAGCGCCAGGACTTCCAGCGtgtagagagagaaagggaaaatcTCAAGGCCGAGCTGCAGAAGATGAGGCAACAGGCTCAAGAGACGAAGCAGTTCATTGAGAAACAGGAGGCAGAGGAACGCGAGCTGCTGAAGATCATAGCGGAGGCTGACGCTGAGAGGATCCGGCAGAAAAAAGAGCTCGATCAGGTGAGGAATGAGCGTGACCTCCTGGGAATGCAGTTGATGAAGAGAAACGAAGCACTGGCCTTACTGTACGAAAAGATCAAAGTCCAGCAGTCCATAATGAACAAGGGTGATATACAGTACAACGAACGACTGGAGGATATCAGACTCCTGAAGCTAGAGATCAAGAAGCAAAGACGAGAAAAGAACATCATCAACAAGACCGTCTCTAATGTGGAGGACCTCAGACATGAAGTGTTTCATATGCAGAGGGAGCTTCTGAAAGAGAGGACAAGATGTCGAGCTCTAGAGGATGAGCTTTCAAATCCCTTGAATTTACACCGCTGGAGAAAACTAGAGGCGAGTGATCCAAGCAGCTTTGAACTGATTGAGAAGATTCATTCTCTTCAGCGGAGACTGATAGCGAAGACTCAGGAAGTTGTGGAGAAAGAGCTCATGCTACAAGAGAAAGAGAAGCTTTACGTGGAGCTGAAACACATCCTCGCTCGGCAGCCTGGTCCAGAAGCAGCGGAAAAACTACAGGTTTATCAGAGAACTCTCCGGGAAAAGACCAAACAGCTGAAGGTCCTAACAGCAGAGCTCAACATGCACGAGTCCCAATCAGAAGACTACAAGTATGAGATCGAACGTCTGGCCCACGAACTCCAAGAAGTCAAGAAAAAATACCTCGCACAGAAACGGAAAGACCAGGAGCACAGGGAGAAGGAGCGAAATCTCACCCAGGCAGGACAGCCTGTGATCCAGCCTCAGCGTCCGGACGGCCCTAGATTCACTGGAGGAGGCTTCAgttttaagcagcacaacaggaTGACACTTCAGGCTCTGGAACAGCAGTCCTGATGCCCGCCAGAACCCTCTGAGGACCCTCTTCACCCATCATCGCCTCTTGATAGACCGTATTTTCTTGTACTTATTCAGCTCTATTGGTGCTGGCCAACTACCCAGTCAGCTGCTGTAAGCCTTGCACTAAATTCAGTTCTTTTTGCCTTCTGGAATAAATAAAGTCTATTATTTTCA

Function

symbol description
cfap58 Predicted to be active in cytoskeleton. Human ortholog(s) of this gene implicated in spermatogenic failure 49. Orthologous to human CFAP58 (cilia and flagella associated protein 58).

NR:

description
cilia- and flagella-associated protein 58

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043232697.1 True 2922 mRNA 0.46 18 23205389 23276768

Neighbor

gene id symbol gene type direction distance location
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding upstream 58089 23064152 ~ 23147300 (+)
stn1 obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065 coding upstream 142039 23059632 ~ 23063350 (+)
trnae-cuc_5 NA coding upstream 146286 23059032 ~ 23059103 (+)
lrrc58a lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937 coding upstream 147233 23054530 ~ 23058156 (+)
fstl1a LOC107566530,LOC107746304,LOC107676844,LOC107746068,LOC107692113 coding upstream 151454 23044523 ~ 23053935 (+)
sorcs3 LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478 coding downstream 408027 23684795 ~ 23732246 (+)
caly caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014 coding downstream 907313 24184081 ~ 24192107 (+)
msx1b msx1b,LOC107569049,LOC107675944,LOC107706889,LOC107684328,LOC107583240,LOC107729361 coding downstream 939043 24215811 ~ 24218006 (+)
taf5 taf5,LOC107676012,LOC107574147,LOC107583167,LOC107684290 coding downstream 965926 24242694 ~ 24250298 (+)
pdcd11 LOC107729346,LOC107676223 coding downstream 974585 24251353 ~ 24265835 (+)
LOC122350307 NA non-coding upstream 22958 23181003 ~ 23182431 (+)
LOC122350314 NA non-coding upstream 51088 23153734 ~ 23154301 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding upstream 51791 23149192 ~ 23153598 (+)
LOC122351271 NA non-coding upstream 161255 23042249 ~ 23044134 (+)
G5289 NA non-coding upstream 339599 22864834 ~ 22865790 (+)
G5548 NA non-coding downstream 194502 23471270 ~ 23471530 (+)
G5553 NA non-coding downstream 212348 23489116 ~ 23491559 (+)
G5552 NA non-coding downstream 213227 23489995 ~ 23732723 (+)
G5551 NA non-coding downstream 214846 23491614 ~ 23735603 (+)
G5554 NA non-coding downstream 215846 23492614 ~ 23493639 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 353996 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1570337 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1584797 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1843949 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2962040 20241818 ~ 20243349 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 266296 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1006714 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1280029 24556797 ~ 24558929 (+)
G5817 NA other downstream 1427080 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 1707278 24984046 ~ 25398340 (+)

Expression


Co-expression Network