foxe1 (foxe1,LOC107598243,LOC107757598,LOC107700287)


Basic Information

Item Value
gene id foxe1
gene name foxe1,LOC107598243,LOC107757598,LOC107700287
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15050819 ~ 15052876 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233686.1
TCTTCAGCATTAGGAAGACTACCATCAAAAAAGGCTGCTTATGTGAgtgcatgcattttttgtaaCTTGCTGCTGCAAGAACTGCTTTGAATTTAGGGCATCACAGTGCAAGGACACACCTGACGTTCCAGATGAAGTGCGAAGGAACTGATATTTCTGGTTGGGGATTTTAAGGTCTGCATTATGACTGCTTTTTTTCCACCAGAATATTTCCAGCAAGCAAAGAACACTTGTTGCACCTGACAAAGAACCAAGTGAACCAAAACCGTGACAGTCAGACTATTGTGATTTAAAACGCCGTGCTACCGTTGGGAGTCATTCTAACTAGAGTCATGCCTGTGGTTAAAGTGGAGAGCAATTCTCCCTCTGAAACCACTCTTCCAGTGAGTGACAGTCAGAGAGCAGAGCCGCAAAGAGGACGCCGGAGGAAGAGGCCCCTTCAACGAGGCAAACCACCATACAGCTACATCGCCCTGATTTCAATGGCCATCGCCAACTCGCCCGACCGCAAACTCACTCTTGGAGGGATCTACAAGTTCATCACAGAGAGGTTTCCATTCTATCGAGACAACTCCAAGAAATGGCAGAATTCCATCCGCCACAATCTGACGCTCAACGACTGTTTCATCAAGATCCCCCGAGAACCCGGTAGACCTGGAAAAGGCAACTATTGGGCACTAGACCCCAATGCTGAAGACATGTTTGAAAGCGGAAGCTTTCTGCGACGGCGAAAACGGTTCAAACGCAGCGACTTTACCACGTATTCATCGTACGTTCACGAGTCCCCCGTCTTCTCGCCTGTCCAGATTGCGCGCTCAGCTTACGCCAACTCGGTCTACTCCAACATGGCTGTAAGTCCACCATATGCCCAACAGATACCTTCTGCTTACTACCAGTCCTCCTCTCCTAGCTTCAGTGCCGGTCAGTCTAGGGTCTTCAGAATCAACTCTCTCATTGGGTCACCTGGCAGGATGGGGCAAAGTGCAGAGATGATACCTCAGCAGACTTGCCGCAGTTTCAGTCCCGAGAGTGGCTCCTGCAGTTTGGGAGGACCGGGCTTCCAGCATCAGTCCTGCAGTGGCGAGACAGTGCTGTCGTGTTGCTCAAGCTCCTCAAACAACATGGCCTTTGCCTACTCCAGCACAGGACACGGACAGACTCAGGTATCGTATCCACAAGGCAGCACCCAGGCCTACGGGCCAACAGGGAGGATGGCTATCTCTAGTTTGTCTCCCATTGCTGGGGATGCTGTGGGGGACCCCTACGGCAGAACCTCCCCTGCACAGCTGGGCTCTTTTGTTCAGTACAATAACTCCGGGCCGGTAGGAAGCTCAGGAGCCTACATCAGGCATCCAGCTTACTCGGGTAACATGGAAAGGTTTGTGACTGCCACCTAAACAAGTTCACAGATGATTACTTTCCATTGCAAGAACACGGGCGCACAAGAACCTTTGGAGactattttagaaaatatgaaaaacattctgaaaagaCAACTGTGATATTTAAGctgatgttattgttttattgttataccATCCGTTGAGTAAATGGAAATGTTAATAATCTCAATGTATGCCTGTACAGCGTTTTCcttttacattgtaaaacaaatgtttacaaagatcaaactttgttttgttttttttttcctttttttaattatttgagtgAAATGTGTTCATATGCTTTGTATACACACTTCTTATCAACTGTCATCTGGAGTAAATGCTTCGATTTGCTTAATTCAGTGATATAAAATTGTTTCTACAAGAGGTTGTGTTGCTATATCCTTTGGAGAATGATGAGATTTGaaaaatttcaatttgaatTTAACGGTGAACATATAAAGAACATGCAAGAATCTATTTCAGCGGAACTCTAAATGTACAGAAATTCGAACAGatttcacttattttatttacacatttctaAAAGACGTCATgccaaataattatataattgatattatataatatctAGTATTGTATACATTCATTTGTTACAAGCTTTCGAATaagcaaaacaatattttaacatgcaGTTAGATACAATAAT

Function

symbol description
foxe1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis and growth plate cartilage chondrocyte proliferation. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; endocrine system; head; notochord; and pharynx. Human ortholog(s) of this gene implicated in Bamforth-Lazarus syndrome and thyroid gland papillary carcinoma. Orthologous to human FOXE1 (forkhead box E1).

NR:

description
PREDICTED: forkhead box protein E1

GO:

id name namespace
GO:0003419 growth plate cartilage chondrocyte proliferation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002089 lens morphogenesis in camera-type eye biological_process
GO:0007389 pattern specification process biological_process
GO:0030878 thyroid gland development biological_process
GO:0060022 hard palate development biological_process
GO:0060023 soft palate development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0006590 thyroid hormone generation biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG:

id description
K09398 FOXE; forkhead box protein E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233686.1 True 2058 mRNA 0.44 1 15050819 15052876

Neighbor

gene id symbol gene type direction distance location
trmo trmo,LOC107580156 coding downstream 13128 15033169 ~ 15037691 (-)
anp32b anp32b,LOC107595056 coding downstream 21461 15024645 ~ 15029358 (-)
ints12 ints12,LOC107714643,LOC107695298,LOC107595100 coding downstream 71401 14976363 ~ 14979418 (-)
ppa2 ppa2,LOC107714645,LOC107595053,LOC107695313 coding downstream 87686 14959165 ~ 14963133 (-)
cdkn2a/b LOC107595098,LOC107714625,LOC107695349 coding downstream 185686 14862844 ~ 14865133 (-)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329,LOC107695241,LOC107598242 coding upstream 10561 15063437 ~ 15079410 (-)
cntln cntln,LOC107595061 coding upstream 44145 15097021 ~ 15178446 (-)
pspc1 pspc1 coding upstream 474278 15527154 ~ 15581541 (-)
dnajb14 dnajb14 coding upstream 532703 15585579 ~ 15626410 (-)
sugt1 sugt1,sgut1 coding upstream 579189 15632065 ~ 15650309 (-)
G3546 NA non-coding downstream 46531 15001285 ~ 15004288 (-)
G3502 NA non-coding downstream 202243 14848025 ~ 14848576 (-)
LOC122336348 usp53b,LOC107714652,LOC107572698,LOC107695415,LOC107598280,LOC107700316,LOC108442608 non-coding downstream 276899 14772740 ~ 14773920 (-)
LOC122336242 NA non-coding downstream 278089 14771467 ~ 14772730 (-)
G3495 pdcd4a,LOC107598278,LOC107700321,LOC107757625,LOC107695387,LOC107595047,LOC107714648 non-coding downstream 291794 14758120 ~ 14759025 (-)
G3570 NA non-coding upstream 176460 15229336 ~ 15229753 (-)
G3572 bnc2,LOC107595060,LOC102789865 non-coding upstream 222008 15274884 ~ 15275311 (-)
G3577 bnc2,LOC107737409,LOC107737408,LOC107678088,LOC107595060 non-coding upstream 251112 15303988 ~ 15306245 (-)
G3578 NA non-coding upstream 253772 15306648 ~ 15306904 (-)
G3581 NA non-coding upstream 257459 15310335 ~ 15310542 (-)
G3515 coro2a other downstream 21199 15020642 ~ 15029620 (-)
G3522 NA other downstream 125456 14925085 ~ 14925363 (-)
cxxc4 cxxc4,LOC107695705 other downstream 132033 14898201 ~ 14918786 (-)
G3491 gpank1 other downstream 301844 14746829 ~ 14748975 (-)
myoz2b myoz2,myoz2b,LOC107695402,LOC107700320 other downstream 336273 14686596 ~ 14714546 (-)
G3571 NA other upstream 177663 15230539 ~ 15230886 (-)
alg11 alg11,LOC107556718,LOC107588826,LOC107705036 other upstream 1016301 16069177 ~ 16073920 (-)
march4l zgc:153256,march9,LOC107719730,LOC107654275,LOC107556712,LOC107707834,LOC107699089 other upstream 1106816 16159692 ~ 16198263 (-)
igf2bp2b igf2bp2b,LOC107704342,LOC107573191,LOC107699092,LOC107556709 other upstream 1281326 16334202 ~ 16359025 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1394212 16447088 ~ 16448519 (-)

Expression


Co-expression Network