rnf11a (rnf11a,LOC107757048,LOC107694828,LOC107583209,LOC107747427,LOC103044796,LOC108441179)


Basic Information

Item Value
gene id rnf11a
gene name rnf11a,LOC107757048,LOC107694828,LOC107583209,LOC107747427,LOC103044796,LOC108441179
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31745962 ~ 31750050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233753.1
TTTTCCTTGTATTTCTTCGGTATTTGCGGAACGAAAAacgaaaaactacattacccacaaGCCACAGATCAACCCACTTCCGGTCCAAGAGTTTGTAAACAATGAAAGGAGATATGGAGTCGACGAGAGGTCTTACCTAAAAATATTGTCCTGTACAAGCCATAATACGCGCATATTATATGTCATGCACGCCGTGCACACCCGTAAGGGTTAAACCAACCGGGGCGTATCGGTTTTCGAGGATTGCCGCTCTTTTACGCGTGCTTTTTGCCTGAGCGAAAATCGGACAGCTGGCTAGCGACGCGTTTGTTTTTCTAGATACTAGACGGGCGTCAGACACAACGGGCTGCAGAAAGGACGGTCCCTGAACACAACCGAGGACTGGCGAGTCTTTCAAGGGCCACCTAGACGTGATTTTGTCGTGCGGTGCGGGATCAGCTCAATGGGGAACTGTCTGTCTTCTCAAGGCGCTGATGATCTGTCCCTGCTCAACGAGTCCGAGGGGGCGAGTCTGCCGGGAGAGCCTCCGCCACCCTACCAGGAGCGGGTGCAGGTGCCGGTGTACCATCCCACACCCAGTCAGACGCGGCTGGCCACTCAGCTGACGGAGGAGGAGCAGGTCCGTATCGCTCAGCGCATCGGCCTCATCCAACACCTGCCCCGTGGGATCTTCGATCCGGGCTCGGAGCCGTCCGACAAGAAGATCAAAGAGTGTGTGATCTGCATGATGGACTTTGAGTACGGCGACCCGATCCGGTTCCTGCCCTGCATGCACATCTATCATGTGGACTGCATTGACGCCTGGCTCATGCGCTCCTTCACTTGCCCTTCCTGTATGGAGCCCGTGGACGCTGCGCTGCTGTCTTCCTACGAGACGAACTGAGAGTGCCTGCGGAAAAACCCAGAGACCTGCCAATGAGTCTGCCAAGAGCCCTGAAACACTTGGGACAGTAGATTGAACAAATgaaggtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcagaGACTGTAAAAATGTCCAGTGCTGAACTTAAAAGGCCCTGGAAGGATGTTTAAAACCTCTCACTTGCATGTCAAAGCGTTTTTCGAATACATATACATGTGATTGATGTAAAAGTGAAGTTCGGCAAGGTGGAAAAAATTCTCTAATGAAGATAGAGCGTTTCAAAAGCCTGATTCGAATCGGTAAAATAGagttaataaattattgaaCTTTTTTCCTTTATTGTTCTAACCAAATTCATGAAATGTGCAATATATGCGAGAGGGACTCGTGTCCTTCTGATTGGACGTGGAACCCGCCCGTCGCCGAAATTCCACCAATGAGATCGCCCTTTCCGAATTCAACAAGTCTAGGGGGGCGGGGTTTCATTCCTGCAGGCTCTGAATGTGCCTTTTTGGGCTCACGGTTAGAATGCTGAGAAACCGAATTTACAAGAAAACACGTGCCATGATAACGTCTAAGCTCGTGATGCACTAACTGGCGTTTGAGGTCGTagtttcgcttttttttttctccagtctCTCTCCTCGATCACTACATTAACTGCTTAATGCGTCGTGGTATGTCATTTCGTGTTTAATCGTAATGGGGTTGGGGATGAGGTCGTTTAGTGGTAGTTTTGCCTCGTCAGCTGCTGTTTACCAGGTTCTGGGATGTAAGTTGCCTTTTTACACTGGTCATCTTTCCCCTAAATGCTTGTTTTTGGTGTTACATGTTCGTCCCCACTTAGCTTTGCCTTGTCTGTTTGGATAGAACCGCGGGGACCGTCTTCAgcagttttatttctttacttcgGAAGAGAACAATAATGATACAGTCACCAAACTTTGTGCACCTTTCAAATGTTGCCGACTTAAAGTCAGCCTTTACAGTGGAagctttaaagttaaaaaatgaaatggaaaaaaagcagtACATGCTGCGGTTTTGATACTGTTCATAATGTCTTTGAGTCTTTTCTGTATGTTAGCTGAATATATGATCTTATACCTGTCACGGTTTAAACTGCTTGTGCAAAAAGGAAGATTTTCACCTTTGTTTGCTCAGTTGTAGTGCTGGATTATTCACGCTAATCGGACTGAACTGTGTTAAGAGCCCCACGTTTAGCCTGAAgctatattcataaaatatttcatcCTGCTCAGGCTTCCCTCTGTATCTCTGTACTGAACCATTGTGACTTAAAATGTGATTGAACACCGAGAACAGTGTCTGAAAATCTCGAAATCAACCTGTTATTACGCTTAGATATCATATTGGATGAATTACTTTTCtgttaatgatttaaaattgaaatgtagCTCTAGCACagcacaaatgtaaaaaaaaataaatgtaataattctgTGAAGTACAATCATCACAACATTATATTTAGTTtcgaaataaaattaattctttttttttaaagagttgtTGGTGCCATATAAGTGTACGTTTGCCAACAAAAACATTAGCAGGTATACTATAAAAATGATGTGTTTGGTTTATGTGCAATAATGGCACAAGAATagtattataatacaataaaggTTGCCAAATTCTTCCATA

Function

symbol description
rnf11a Predicted to enable metal ion binding activity. Orthologous to human RNF11 (ring finger protein 11).

NR:

description
PREDICTED: RING finger protein 11-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233753.1 True 2609 mRNA 0.45 3 31745962 31750050

Neighbor

gene id symbol gene type direction distance location
get3 asna1,LOC107569530,LOC107583208 coding downstream 263 31739785 ~ 31745699 (-)
best2 best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332 coding downstream 11029 31728088 ~ 31734933 (-)
LOC122327810 LOC107747443 coding downstream 84359 31634401 ~ 31661603 (-)
glb1 glb1,LOC107746116 coding downstream 143521 31595831 ~ 31602441 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding downstream 150667 31591137 ~ 31595295 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding downstream 156172 31580738 ~ 31589790 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding downstream 165806 31579930 ~ 31580156 (-)
G8093 NA non-coding downstream 197208 31548195 ~ 31548754 (-)
G8074 NA non-coding downstream 250052 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 265618 31479187 ~ 31480344 (-)
LOC122349752 NA other downstream 115942 31626903 ~ 31630020 (-)
LOC122349741 NA other downstream 119278 31622674 ~ 31626684 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other downstream 191927 31550186 ~ 31554035 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other downstream 208546 31532069 ~ 31537416 (-)
G8009 NA other downstream 788476 30943498 ~ 30957486 (-)

Expression


Co-expression Network