best2 (best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332)


Basic Information

Item Value
gene id best2
gene name best2,LOC107676102,LOC107569522,LOC107583204,LOC107694823,LOC100695332
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 31728088 ~ 31734933 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043233764.1
TGGAGCTCGGTGGAGCGTGATGACCGTCACTTACACGGCCAGAGTGGCCAACGCGCGCTTCTGCGGCTTCTCCAAACTGCTGCTGGCCTGGAAGGGAAGCATCTATAAGGTCCTGTACAAAGAGTTCCTGGCCTTCTTCGCCATGTACGCGGCGATCAGCATCACATACAGATTCTTCCTTGCGGACGATCAGAAGAGATACTTTGAAAAGCTGTCTATTTACTGCAACAACTACGCCAGTCTCATCCCAATGTCCTTCGTATTAGGGTTCTACGTGACACTGATAGTGAACCGCTGGTGGAGTCAGTACAGCTCCATCCCGCTGCCGGACCGGATCATGTGCACGCTCTCGGGGGGTGTTCAGGGCGGGGACGAGCACGGCAGGCTGCTGCGCCGCACGCTGATGCGTTACGTCAGTCTGTCCGCGCTCCTGATCCTGCGCTCCGTCAGCACGGCCGTCTTCAAGAGGTTCCCCACCATGGACCACGTGGTCGAAGCGGgTTTTATGACCAGAGAAGAGCGTAAGAAGTTTGAGAGTTTACACTCCCCCTATAATAAGTACTGGATCCCGTGCGTGTGGTTCACTAACCTGGCCGCCGTGGCTCGCTGCGAGGGCAGGATCAAAGATGACAACACGTACAAACTTCTTTTGGAGGAGCTGAATGATTTCAGAGGGAAGTGCAGCATGCTTTTTCACTACGACATGATCAGCGTGCCGCTGGTCTACACACAGGTCGTGACGCTGGCGGTGTACAGTTTCTTCCTGGTGTGTCTGATTGGCCGTCAGTTCCTGGACCCGAGTCAGGGTTATCCGGGTCACGATCTCGACCTCTATGTCCCTATCTTTACTCTCCTGCAGTTCTTTTTCTATGCTGGCTGGTTGAAGgtggcagagcagctcataAATCCATTcggtgaggatgatgatgactTTGAGACCAACTGGTTGATTGATAGAAACTTCCAGGTGTCTATGATGGCGGTGGACGAGATGTATGGAGATCTGCCCGTGATGGAGAGAGATCGTTACTGGAACGATTCGAACCCCCGTCCGCCGTACACAGCCGCCACGCTCTTTGTGCTGCGCAAACCCTCCTTCCAGGGCTCCACCTTCGACATGGCAATTCCCAAAGAGGACATGCATTTCCAGCCTCTGGAGGAGATCGCTGAAAACCTGGAGGAATCTGTGACACGCAATCACAACCTGGCCCTCTTTAACCGGCTGCTAGGCTCCGCCCCCTCTCCCACAGGCTTCGTGGGCGGAGCCTTACGGCGCACCTCCGCCCAGCTGCAGCGCTTGACCCGCTCCGTCAGCCCCGACCCGTCCTTCTCCGACGCGGAGGACGAGGAAGACAAGAGCGTGGGGAGGAGCACGGGATCCATGCCGTCTGGACTCGGCCTGGACACCACCCAGAGCACCATCTGCAGCTGCGGAGGACTCATCGGCACCTGTCCTCCTCTGTCCGGGGCGGAAGTCCACGCGCAAGGTGAGAGAGCTGGAGAGAAGATGACCGAAAAACAGCCACAAGTGCCAAAAATCCCGCCTCCCACGGCGCGGACGTCCACAGGCAGGAGGAGTCCTCTTGCTCTGGCGGTCAAGTCTCATTTCTGGACCTCAAACGCCACCAACCGCTCCGTGCCGGACTTCTTCTCCTTCCATCCTATCGGTGACCCGCTAAAGGTCATGACCCCCAAACCACAGCGGAGCGACGGCAAAGCAGAAGCAGCGTCTTTGCTGGCTGTCCCGTCGATTGAAGTCTCCACGTTCCCACAGAACACAGGAAGAAAGCAGATGCTGGCCGATTCACAGCTGCTGCCCTCGAACGGTCAAACCCAATGTCAGTGTGCAGGTCTAGGGTCGGAGGTCACGGGGGCAGGGGGTCCGGTCAAACAGTGACCAAATACACTGAGAAGCAGATCCtgcttatattatttttttaatacattaatttagaCAATGTTTGGAGATCATTTAACTGTATTTGTAGACTAATCATGCGACTCAACCATAATAAGCACTTAAATCCATCTAGTTTTTCTAGTTTCTTGAAAATTAATCGAgtgcatgtttatataaaatagcaaCACGTGAccaaaaattgcatttgaatatgcaacaataaattaaagaaTGAATAGGACACAAGCAACGCtcttatgaatatgaataaaaggGTTTAGATGATTATTAGGTTTGATCCAAACTGTAATGATGGGAATGATCCTCATGAGGGCAGTATTGCAGCAGTCTTCTGGTTCTTTCTGATCCATCggtgaaacacaaaacaagtaACAATATGTTAAGCAAAGCTATGCATTtattctctctctatatatagtTTACAACAgaatgagtttctagttttaCAATAGGAACAGAAAGAAGTCTAATTAAAAGCTGGGAAACTGAATTCaaggttttattaaattatattaatcattGCACAAAAGAATTCACTTACAGAAATGTTTCACGATCTCATCATCAAGGTTGAAAATATTGCCGTTAAAGAAGAAGCATCAGTTTTATTGAAGGAAATGAGGAGACACTATGCACacgttttttatatatttgctggAAAGCGAAAGTCTTACATTTCTCTAGACgactgtaaattatattttttaataaaaggaaaacGTTTCTCCCcgatatttattttctttgtctttgaatatttaaatatgtgtactattttattactaaaatatatccCTAAAACTTCACAGAGTGCAGGATGTTGAATAACCCTGACAGGTGGAGTTTATAACACTGagcaaaaaaaagatgaaataagaaataagatgATTTAGCAGTCTTTGGAATGAAGATAAGCAGtcctttaaaatgtcaaaagaaatgattttttccattttatttctgcttttctctctGCGAGGCTTGGCAGGCGCAATGTGCTTTAGGATGTCTGTGCATGCAgtatttaaaagcacaaaaagtgTTGATCTGCATCTAGATCAGAAGTGTTCGTGAGTAGGCTTGAGATGAGCGAATATCAGACGCATGAAAAATAACTggaaaataatcagaaataaagATTCGAATGATCTCCATTTCTCTTATAGAGAGGCCGAGGGAGAGCATTAAGTCCAAGTCGTGTCCTAAAACTCGCGTGGGTTGTTTATAAATGTGGAGGCCGACGGATCAAAGTTTATATAATAGGTTCAGACCGGTCAAGTACAGCTGAGCTTCAAAGCTGGAGAATATAGTAGATGCTAACAGTCCTTAGCAATGATGGCTAACCACCTTTACCAGGGAGGCGGGGagagtttttataaatatgatctCTGGTATGGATTGAAATCAAATCTGTGTGTATGCACaatttataaatgaggccccttGAGTCGGCCAGGGATTCAAACCAATCAAAATAAGCATCTTCCGCTCCATTCAAGAGActtggagtttttttttcttataaatctAGTGTATATTGATat

Function

symbol description
best2 Predicted to enable chloride channel activity. Predicted to act upstream of or within chloride transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Orthologous to human BEST2 (bestrophin 2).

NR:

description
PREDICTED: bestrophin-2-like

GO: NA

KEGG:

id description
K13879 BEST2, VMD2L1; bestrophin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043233764.1 True 3465 mRNA 0.47 9 31728088 31734933

Neighbor

gene id symbol gene type direction distance location
LOC122327810 LOC107747443 coding downstream 66485 31634401 ~ 31661603 (-)
glb1 glb1,LOC107746116 coding downstream 125647 31595831 ~ 31602441 (-)
cldnd1b cldnd1b,LOC107746097,LOC107757065,LOC107570824,LOC107703857,LOC107657989 coding downstream 132793 31591137 ~ 31595295 (-)
tacr3l tacr3l,LOC107570821,LOC107657987,LOC107757062,LOC107703855,LOC107746088,LOC108411976 coding downstream 155467 31561981 ~ 31572621 (-)
LOC122349710 patl1,LOC107594300,LOC107657997,LOC107703847,LOC107598520 coding downstream 335002 31384340 ~ 31393086 (-)
get3 asna1,LOC107569530,LOC107583208 coding upstream 4852 31739785 ~ 31745699 (-)
rnf11a rnf11a,LOC107757048,LOC107694828,LOC107583209,LOC107747427,LOC103044796,LOC108441179 coding upstream 11029 31745962 ~ 31750050 (-)
G8101 acy3.1,LOC107571911,LOC107746091,LOC107746117,LOC107703856,LOC107757064,LOC107570819,LOC107570825 non-coding downstream 138298 31580738 ~ 31589790 (-)
G8100 acy3.2,LOC107657988,LOC107570825,LOC107703856,LOC107571911 non-coding downstream 147932 31579930 ~ 31580156 (-)
G8093 NA non-coding downstream 179334 31548195 ~ 31548754 (-)
G8074 NA non-coding downstream 232178 31492297 ~ 31495910 (-)
G8084 NA non-coding downstream 247744 31479187 ~ 31480344 (-)
LOC122349752 NA other downstream 98068 31626903 ~ 31630020 (-)
LOC122349741 NA other downstream 101404 31622674 ~ 31626684 (-)
G8089 abca1a,LOC107571910,LOC107703854,LOC108413301 other downstream 174053 31550186 ~ 31554035 (-)
G8091 abca1a,LOC107703854,LOC107746118,LOC107571910,LOC107570823 other downstream 190672 31532069 ~ 31537416 (-)
G8009 NA other downstream 770602 30943498 ~ 30957486 (-)

Expression


Co-expression Network