lipt1 (lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931)


Basic Information

Item Value
gene id lipt1
gene name lipt1,LOC107676853,LOC107712244,LOC107692196,LOC107567789,LOC107603034,LOC107715555,LOC107718931
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 22412157 ~ 22414170 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234736.1
ATCATttgagtttttgtttgtgtttcaaaaCGTAGAAATATTACGGtattattaagttaaattaataacGTATACCTCCGGGCGAATCTgtgcaacaaacaaacaaacaaacaaacaaaccgcatttcattcattctactgtatttatttttattagcacttttaacaaccaCAGATCAAACGCATTCTTAAATAACGTGTTTTTTAGGGTCAACATGGCATACATTTAACGTGCAACTTATTTTTGCGTCGTGTGGGACTCTTATTATGCTTTGACAGGAAACGGTATCCTGTCGACCCGGTTGTTAACGGTAATGTTCCGCTGCTGCAGGTTTGGGAATAACAGTGCCTCAACTTTGCAGATCGGTATTTCGTGCGCGTTATTGGTCAAACGTTACATTTACCCACAGCGGAAATTAATAGTCTGTGGTTTATTCGTGCTTTACAGACTTTTGTAGAGTTAGCCATGATTTTGAGACTGTCAAACAGGGCGTGCGTCCCCTTCGGGTCGGTCCGCTTCAAAAGCACTTTGTCAACCTTCTTCGACGAGACGGGAAAAGCTGGTATCGTCCTAAAATCTGCATCAACTgacatatttgaaaatctggccTTAGAAGACTGGATTCACGATCACGTCGATCTGCAAAACAGAAGCGTGTTGTTGTTATGGAGAAACTCCCCCGTGGTTGTCATAGGCAGGCATCAAAACCCCTGGCAGGAGTGTAACCTGCCCTTGACGAGGCGCTTGGGAATCCCTCTGGCGAGGCGTCGCAGTGGAGGCGGGACCGTTTTCCACGATTTCGGAAACCTCAACATGACCTTCTTCACCTCCAAGAAGAAATACGACCGTCACCGAAACCTCAGGGTCGTTACTAGCGCGCTAAAAGCGCTGAGACCCGACCTAGATGTCGCAGCGACGGACAGATTCGACATTTTGTTAAATAGCCGTTACAAAATATCAGGCACTGCCGCGAAACTAGGCAGAAGCTCTGCGTATCATCACTGTACGTTGCTGTGTTCTGTTGACCGTTCATTATTGTCCTCGGTGTTAAAGAGCAACGCTTCTGAAGTTATCAAAAGCAACGCTACCCCAAGCGTCCCTTCCCCCGTCAAGAACCTCTTAGACGTGGATCCCACTCTTGACTCTGACTCTATCGTGGATGCCATTGCTTCCCAGTACAGCCGTGAGTTTGGCTTTGACGGCCCAGGCGTCACGGTCGACCCCTCTCAGGAAGCTCTCATGCCTGGCATTCGCAACATGGCGCGGGATTTGCAGACGTGGGAGTGGATTTACGGCAGGACTCCAAAATTCAGCGTTTGCGCTTTGCTTGCGGTGGATGATGTGACTGTTAAGCTCGACATGGACATCAAAAACGGCGTTGTGGAACAGTGTGCTGTGGGTGTCCCGGAAGACTGGCTCCCTCCGGAGATGGTGAATGAGTTCACGTCAACTCTGAACGGCAGCAGATACTGTCCGACTGAAACCGCGGCGCTGGTGGCGGCGTTCGTGAGGACCGTTTCGGTGACTGGGGATGTTGCCGAGAGGATTCATAGATTGTGTGCCGGTGTGGTTTCAGTGATGTGAATAAAATTGTCCGGAATAAACGCTATGTGATGCTTAACTTCAAAATCTTTGAAGTGGTCCCCTGCGCAGTCACACTTTACagatatgaaaaacaaataatgctgCTAATTCTGTGATCAAACTTGGAATTTTAAGCTTCTGGAAGACTTTAGAACAGACATAATTCACGTGCAATTGAAGTGCTTGCCAATATTAATAGAGCAATAATGTAagaataaagattattttattgatGAATTCTATACAAAATCTTaagatgtgtatttttatataaatgcgttgctttgcattaattaaaatttaaatattaatatatgtagcACAGGTGCATTTGTGTACTTCAACGTtgttgatttttctttcatgtcaaaaatcattagaacaTGAAGATCGTGCtccatgaagatgttttgtaaattacctacccta

Function

symbol description
lipt1 Predicted to enable lipoyltransferase activity. Predicted to be involved in protein lipoylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in mitochondrion. Orthologous to human LIPT1 (lipoyltransferase 1).

NR:

description
PREDICTED: lipoyltransferase 1, mitochondrial-like

GO:

id name namespace
GO:0009249 protein lipoylation biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10105 LIPT1; lipoyltransferase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234736.1 True 2014 mRNA 0.44 1 22412157 22414170

Neighbor

gene id symbol gene type direction distance location
map2k7 map2k7,LOC107712243,LOC107692141,LOC107676852,LOC107718577 coding upstream 28188 22371229 ~ 22383969 (+)
pkn1a LOC107712223,LOC107676851,LOC107603033,LOC107561874 coding upstream 41545 22338779 ~ 22370612 (+)
si:ch211-214c7.4 LOC107676873,LOC107561873,LOC107712236,LOC107692142,LOC107718585,LOC107603029 coding upstream 78334 22309897 ~ 22333823 (+)
mcoln1a mcoln1a,mcoln1,LOC107561871,LOC107676888,LOC107603030,LOC107718592 coding upstream 102771 22296032 ~ 22309386 (+)
trappc5 trappc5,LOC107692146,LOC107712234,LOC107676838 coding upstream 116958 22293448 ~ 22295199 (+)
eif5b eif5b,LOC107567794 coding downstream 468 22414638 ~ 22426760 (+)
arhgef7b arhgef7b,LOC107567796,LOC107676887,LOC107718510,LOC107692139,LOC107746262 coding downstream 12814 22426984 ~ 22448303 (+)
sox1b sox1b,sox1a,LOC107746263,LOC107567792,LOC107676867,LOC107692134,LOC107718482,LOC107603037 coding downstream 101296 22515466 ~ 22518610 (+)
tubgcp3 tubgcp3,LOC107692132,LOC107746265,LOC107718870 coding downstream 189567 22603737 ~ 22621251 (+)
mcf2la mcf2l,mcf2la,LOC107676858,LOC107692131 coding downstream 209382 22623552 ~ 22684618 (+)
G5178 NA non-coding upstream 24629 22385266 ~ 22387528 (+)
G5159 NA non-coding upstream 176628 22232347 ~ 22235529 (+)
G5134 ddx39aa,LOC107712218,LOC107676896,LOC107603018,LOC107692155,LOC107551870 non-coding upstream 342023 22068067 ~ 22070134 (+)
G5132 NA non-coding upstream 370045 22041866 ~ 22042112 (+)
G5112 NA non-coding upstream 460822 21945811 ~ 21951335 (+)
LOC122350977 NA non-coding downstream 111952 22526122 ~ 22530488 (+)
G5206 NA non-coding downstream 125100 22539270 ~ 22539472 (+)
G5223 NA non-coding downstream 301366 22715536 ~ 22733117 (+)
LOC122346574 NA non-coding downstream 321264 22735434 ~ 22741631 (+)
LOC122331092 NA non-coding downstream 338316 22752486 ~ 22757654 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 777105 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 791565 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1050717 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2168808 20241818 ~ 20243349 (+)
si:dkey-9i23.14 LOC107679868,LOC107750009,LOC107552619 other upstream 2266301 20142461 ~ 20145856 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other downstream 426518 22840688 ~ 22851393 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 1128894 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1869312 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 2142627 24556797 ~ 24558929 (+)
G5817 NA other downstream 2289678 24703848 ~ 24704319 (+)

Expression


Co-expression Network